Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04710

Experiment: acetate 68 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04705 and AO353_04710 are separated by 11 nucleotidesAO353_04710 and AO353_04715 are separated by 8 nucleotides AO353_04705: AO353_04705 - poly(beta-D-mannuronate) C5 epimerase, at 1,016,996 to 1,018,615 _04705 AO353_04710: AO353_04710 - alginate O-acetyltransferase, at 1,018,627 to 1,020,075 _04710 AO353_04715: AO353_04715 - poly(beta-D-mannuronate) lyase, at 1,020,084 to 1,021,208 _04715 Position (kb) 1018 1019 1020 1021Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1017.722 kb on + strand, within AO353_04705at 1017.722 kb on + strand, within AO353_04705at 1017.722 kb on + strand, within AO353_04705at 1017.722 kb on + strand, within AO353_04705at 1017.722 kb on + strand, within AO353_04705at 1017.722 kb on + strand, within AO353_04705at 1017.723 kb on - strand, within AO353_04705at 1017.723 kb on - strand, within AO353_04705at 1017.723 kb on - strand, within AO353_04705at 1017.723 kb on - strand, within AO353_04705at 1017.723 kb on - strand, within AO353_04705at 1017.723 kb on - strand, within AO353_04705at 1017.723 kb on - strand, within AO353_04705at 1017.723 kb on - strand, within AO353_04705at 1017.723 kb on - strand, within AO353_04705at 1017.784 kb on + strand, within AO353_04705at 1017.784 kb on + strand, within AO353_04705at 1017.784 kb on + strand, within AO353_04705at 1017.785 kb on - strand, within AO353_04705at 1017.785 kb on - strand, within AO353_04705at 1017.785 kb on - strand, within AO353_04705at 1017.785 kb on - strand, within AO353_04705at 1017.794 kb on + strand, within AO353_04705at 1017.794 kb on + strand, within AO353_04705at 1017.817 kb on - strand, within AO353_04705at 1017.817 kb on - strand, within AO353_04705at 1017.817 kb on - strand, within AO353_04705at 1017.817 kb on - strand, within AO353_04705at 1017.817 kb on - strand, within AO353_04705at 1017.817 kb on - strand, within AO353_04705at 1017.817 kb on - strand, within AO353_04705at 1017.884 kb on + strand, within AO353_04705at 1017.884 kb on + strand, within AO353_04705at 1017.884 kb on + strand, within AO353_04705at 1017.884 kb on + strand, within AO353_04705at 1017.885 kb on - strand, within AO353_04705at 1017.885 kb on - strand, within AO353_04705at 1017.885 kb on - strand, within AO353_04705at 1017.885 kb on - strand, within AO353_04705at 1017.885 kb on - strand, within AO353_04705at 1017.885 kb on - strand, within AO353_04705at 1017.885 kb on - strand, within AO353_04705at 1017.885 kb on - strand, within AO353_04705at 1017.885 kb on - strand, within AO353_04705at 1017.885 kb on - strand, within AO353_04705at 1017.885 kb on - strand, within AO353_04705at 1017.890 kb on + strand, within AO353_04705at 1017.890 kb on + strand, within AO353_04705at 1017.890 kb on + strand, within AO353_04705at 1017.890 kb on + strand, within AO353_04705at 1017.891 kb on - strand, within AO353_04705at 1017.927 kb on - strand, within AO353_04705at 1018.077 kb on - strand, within AO353_04705at 1018.077 kb on - strand, within AO353_04705at 1018.111 kb on + strand, within AO353_04705at 1018.112 kb on - strand, within AO353_04705at 1018.136 kb on + strand, within AO353_04705at 1018.136 kb on + strand, within AO353_04705at 1018.137 kb on - strand, within AO353_04705at 1018.137 kb on - strand, within AO353_04705at 1018.148 kb on + strand, within AO353_04705at 1018.149 kb on - strand, within AO353_04705at 1018.149 kb on - strand, within AO353_04705at 1018.178 kb on + strand, within AO353_04705at 1018.179 kb on - strand, within AO353_04705at 1018.310 kb on + strand, within AO353_04705at 1018.754 kb on + strandat 1018.754 kb on + strandat 1018.754 kb on + strandat 1018.754 kb on + strandat 1018.755 kb on - strandat 1018.755 kb on - strandat 1018.755 kb on - strandat 1018.755 kb on - strandat 1018.755 kb on - strandat 1018.783 kb on + strand, within AO353_04710at 1018.783 kb on + strand, within AO353_04710at 1018.783 kb on + strand, within AO353_04710at 1018.783 kb on + strand, within AO353_04710at 1018.783 kb on + strand, within AO353_04710at 1018.784 kb on - strand, within AO353_04710at 1018.784 kb on - strand, within AO353_04710at 1018.957 kb on + strand, within AO353_04710at 1018.957 kb on + strand, within AO353_04710at 1018.957 kb on + strand, within AO353_04710at 1018.957 kb on + strand, within AO353_04710at 1018.958 kb on - strand, within AO353_04710at 1018.958 kb on - strand, within AO353_04710at 1018.989 kb on + strand, within AO353_04710at 1018.989 kb on + strand, within AO353_04710at 1018.989 kb on + strand, within AO353_04710at 1018.990 kb on - strand, within AO353_04710at 1018.990 kb on - strand, within AO353_04710at 1018.990 kb on - strand, within AO353_04710at 1019.044 kb on + strand, within AO353_04710at 1019.045 kb on - strand, within AO353_04710at 1019.045 kb on - strand, within AO353_04710at 1019.080 kb on + strand, within AO353_04710at 1019.080 kb on + strand, within AO353_04710at 1019.080 kb on + strand, within AO353_04710at 1019.080 kb on + strandat 1019.080 kb on + strand, within AO353_04710at 1019.080 kb on + strand, within AO353_04710at 1019.080 kb on + strand, within AO353_04710at 1019.081 kb on - strand, within AO353_04710at 1019.081 kb on - strand, within AO353_04710at 1019.081 kb on - strand, within AO353_04710at 1019.081 kb on - strand, within AO353_04710at 1019.081 kb on - strand, within AO353_04710at 1019.149 kb on + strand, within AO353_04710at 1019.150 kb on - strand, within AO353_04710at 1019.179 kb on + strand, within AO353_04710at 1019.179 kb on + strand, within AO353_04710at 1019.180 kb on - strand, within AO353_04710at 1019.338 kb on + strand, within AO353_04710at 1019.338 kb on + strand, within AO353_04710at 1019.350 kb on + strand, within AO353_04710at 1019.350 kb on + strand, within AO353_04710at 1019.350 kb on + strand, within AO353_04710at 1019.350 kb on + strand, within AO353_04710at 1019.350 kb on + strand, within AO353_04710at 1019.350 kb on + strand, within AO353_04710at 1019.351 kb on - strand, within AO353_04710at 1019.351 kb on - strand, within AO353_04710at 1019.351 kb on - strand, within AO353_04710at 1019.431 kb on - strand, within AO353_04710at 1019.464 kb on + strand, within AO353_04710at 1019.464 kb on + strand, within AO353_04710at 1019.464 kb on + strand, within AO353_04710at 1019.465 kb on - strand, within AO353_04710at 1019.558 kb on - strand, within AO353_04710at 1019.624 kb on - strand, within AO353_04710at 1019.647 kb on + strand, within AO353_04710at 1019.648 kb on - strand, within AO353_04710at 1019.648 kb on - strand, within AO353_04710at 1019.842 kb on + strand, within AO353_04710at 1019.842 kb on + strand, within AO353_04710at 1019.842 kb on + strand, within AO353_04710at 1019.843 kb on - strand, within AO353_04710at 1019.843 kb on - strand, within AO353_04710at 1019.843 kb on - strand, within AO353_04710at 1019.843 kb on - strand, within AO353_04710at 1019.843 kb on - strand, within AO353_04710at 1019.843 kb on - strand, within AO353_04710at 1020.119 kb on + strandat 1020.119 kb on + strandat 1020.119 kb on + strandat 1020.119 kb on + strandat 1020.119 kb on + strandat 1020.120 kb on - strandat 1020.120 kb on - strandat 1020.120 kb on - strandat 1020.120 kb on - strandat 1020.120 kb on - strandat 1020.120 kb on - strandat 1020.120 kb on - strandat 1020.120 kb on - strandat 1020.189 kb on + strandat 1020.189 kb on + strandat 1020.207 kb on - strand, within AO353_04715at 1020.207 kb on - strand, within AO353_04715at 1020.258 kb on + strand, within AO353_04715at 1020.259 kb on - strand, within AO353_04715at 1020.288 kb on + strand, within AO353_04715at 1020.288 kb on + strand, within AO353_04715at 1020.288 kb on + strand, within AO353_04715at 1020.288 kb on + strand, within AO353_04715at 1020.289 kb on - strand, within AO353_04715at 1020.408 kb on - strand, within AO353_04715at 1020.552 kb on + strand, within AO353_04715at 1020.552 kb on + strand, within AO353_04715at 1020.553 kb on - strand, within AO353_04715at 1020.553 kb on - strand, within AO353_04715at 1020.699 kb on + strand, within AO353_04715at 1020.699 kb on + strand, within AO353_04715at 1020.777 kb on + strand, within AO353_04715at 1020.777 kb on + strand, within AO353_04715at 1020.778 kb on - strand, within AO353_04715at 1020.778 kb on - strand, within AO353_04715at 1020.778 kb on - strand, within AO353_04715at 1020.778 kb on - strand, within AO353_04715at 1020.778 kb on - strand, within AO353_04715at 1020.778 kb on - strand, within AO353_04715at 1020.778 kb on - strand, within AO353_04715at 1020.778 kb on - strand, within AO353_04715at 1020.864 kb on + strand, within AO353_04715at 1020.864 kb on + strand, within AO353_04715at 1020.864 kb on + strand, within AO353_04715at 1020.864 kb on + strand, within AO353_04715at 1020.865 kb on - strand, within AO353_04715

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 68 mM
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1,017,722 + AO353_04705 0.45 +0.6
1,017,722 + AO353_04705 0.45 -0.9
1,017,722 + AO353_04705 0.45 -3.0
1,017,722 + AO353_04705 0.45 +0.9
1,017,722 + AO353_04705 0.45 +1.1
1,017,722 + AO353_04705 0.45 -2.6
1,017,723 - AO353_04705 0.45 +0.9
1,017,723 - AO353_04705 0.45 -0.1
1,017,723 - AO353_04705 0.45 +0.8
1,017,723 - AO353_04705 0.45 +0.8
1,017,723 - AO353_04705 0.45 +0.1
1,017,723 - AO353_04705 0.45 -0.5
1,017,723 - AO353_04705 0.45 -1.7
1,017,723 - AO353_04705 0.45 +1.1
1,017,723 - AO353_04705 0.45 +1.0
1,017,784 + AO353_04705 0.49 -0.5
1,017,784 + AO353_04705 0.49 -1.1
1,017,784 + AO353_04705 0.49 +0.7
1,017,785 - AO353_04705 0.49 -0.1
1,017,785 - AO353_04705 0.49 -0.2
1,017,785 - AO353_04705 0.49 -1.3
1,017,785 - AO353_04705 0.49 +0.5
1,017,794 + AO353_04705 0.49 +0.2
1,017,794 + AO353_04705 0.49 -0.7
1,017,817 - AO353_04705 0.51 +0.3
1,017,817 - AO353_04705 0.51 -1.4
1,017,817 - AO353_04705 0.51 +0.8
1,017,817 - AO353_04705 0.51 -1.3
1,017,817 - AO353_04705 0.51 +0.9
1,017,817 - AO353_04705 0.51 +1.1
1,017,817 - AO353_04705 0.51 -0.1
1,017,884 + AO353_04705 0.55 -1.4
1,017,884 + AO353_04705 0.55 +0.5
1,017,884 + AO353_04705 0.55 -3.1
1,017,884 + AO353_04705 0.55 +0.2
1,017,885 - AO353_04705 0.55 -0.3
1,017,885 - AO353_04705 0.55 -0.9
1,017,885 - AO353_04705 0.55 -0.7
1,017,885 - AO353_04705 0.55 +0.9
1,017,885 - AO353_04705 0.55 -2.6
1,017,885 - AO353_04705 0.55 -0.1
1,017,885 - AO353_04705 0.55 +2.1
1,017,885 - AO353_04705 0.55 +0.1
1,017,885 - AO353_04705 0.55 -1.7
1,017,885 - AO353_04705 0.55 +0.5
1,017,885 - AO353_04705 0.55 +0.0
1,017,890 + AO353_04705 0.55 +0.7
1,017,890 + AO353_04705 0.55 +0.4
1,017,890 + AO353_04705 0.55 +0.4
1,017,890 + AO353_04705 0.55 +0.1
1,017,891 - AO353_04705 0.55 +0.5
1,017,927 - AO353_04705 0.57 +0.6
1,018,077 - AO353_04705 0.67 -0.3
1,018,077 - AO353_04705 0.67 +0.1
1,018,111 + AO353_04705 0.69 -0.9
1,018,112 - AO353_04705 0.69 +0.3
1,018,136 + AO353_04705 0.70 -0.1
1,018,136 + AO353_04705 0.70 -0.3
1,018,137 - AO353_04705 0.70 +0.7
1,018,137 - AO353_04705 0.70 -0.4
1,018,148 + AO353_04705 0.71 +1.1
1,018,149 - AO353_04705 0.71 +2.4
1,018,149 - AO353_04705 0.71 +0.7
1,018,178 + AO353_04705 0.73 +0.7
1,018,179 - AO353_04705 0.73 -0.5
1,018,310 + AO353_04705 0.81 -0.5
1,018,754 + -0.4
1,018,754 + +0.6
1,018,754 + +1.1
1,018,754 + -0.9
1,018,755 - +0.6
1,018,755 - +0.1
1,018,755 - +1.1
1,018,755 - +1.3
1,018,755 - -0.7
1,018,783 + AO353_04710 0.11 -0.9
1,018,783 + AO353_04710 0.11 +0.6
1,018,783 + AO353_04710 0.11 +0.3
1,018,783 + AO353_04710 0.11 +0.6
1,018,783 + AO353_04710 0.11 +0.5
1,018,784 - AO353_04710 0.11 +0.7
1,018,784 - AO353_04710 0.11 +0.1
1,018,957 + AO353_04710 0.23 +0.3
1,018,957 + AO353_04710 0.23 +0.4
1,018,957 + AO353_04710 0.23 +0.6
1,018,957 + AO353_04710 0.23 +1.9
1,018,958 - AO353_04710 0.23 -1.5
1,018,958 - AO353_04710 0.23 -1.1
1,018,989 + AO353_04710 0.25 -0.4
1,018,989 + AO353_04710 0.25 -0.7
1,018,989 + AO353_04710 0.25 +0.4
1,018,990 - AO353_04710 0.25 +0.9
1,018,990 - AO353_04710 0.25 +0.5
1,018,990 - AO353_04710 0.25 -0.5
1,019,044 + AO353_04710 0.29 +1.6
1,019,045 - AO353_04710 0.29 +0.6
1,019,045 - AO353_04710 0.29 +1.1
1,019,080 + AO353_04710 0.31 +0.7
1,019,080 + AO353_04710 0.31 -1.5
1,019,080 + AO353_04710 0.31 +0.1
1,019,080 + +1.1
1,019,080 + AO353_04710 0.31 +0.4
1,019,080 + AO353_04710 0.31 -1.7
1,019,080 + AO353_04710 0.31 +0.6
1,019,081 - AO353_04710 0.31 -0.6
1,019,081 - AO353_04710 0.31 -2.3
1,019,081 - AO353_04710 0.31 -1.5
1,019,081 - AO353_04710 0.31 +1.4
1,019,081 - AO353_04710 0.31 -1.4
1,019,149 + AO353_04710 0.36 -0.3
1,019,150 - AO353_04710 0.36 +1.6
1,019,179 + AO353_04710 0.38 -2.5
1,019,179 + AO353_04710 0.38 +2.1
1,019,180 - AO353_04710 0.38 +1.1
1,019,338 + AO353_04710 0.49 +0.2
1,019,338 + AO353_04710 0.49 +1.1
1,019,350 + AO353_04710 0.50 -1.3
1,019,350 + AO353_04710 0.50 +2.1
1,019,350 + AO353_04710 0.50 +0.3
1,019,350 + AO353_04710 0.50 -1.5
1,019,350 + AO353_04710 0.50 +0.3
1,019,350 + AO353_04710 0.50 +0.6
1,019,351 - AO353_04710 0.50 +0.8
1,019,351 - AO353_04710 0.50 +0.6
1,019,351 - AO353_04710 0.50 +0.1
1,019,431 - AO353_04710 0.55 -0.4
1,019,464 + AO353_04710 0.58 -0.3
1,019,464 + AO353_04710 0.58 -0.3
1,019,464 + AO353_04710 0.58 +1.1
1,019,465 - AO353_04710 0.58 -0.6
1,019,558 - AO353_04710 0.64 -2.1
1,019,624 - AO353_04710 0.69 -1.7
1,019,647 + AO353_04710 0.70 +1.1
1,019,648 - AO353_04710 0.70 +1.3
1,019,648 - AO353_04710 0.70 -0.8
1,019,842 + AO353_04710 0.84 -2.7
1,019,842 + AO353_04710 0.84 -0.5
1,019,842 + AO353_04710 0.84 +2.1
1,019,843 - AO353_04710 0.84 +0.7
1,019,843 - AO353_04710 0.84 +0.7
1,019,843 - AO353_04710 0.84 +0.9
1,019,843 - AO353_04710 0.84 +0.6
1,019,843 - AO353_04710 0.84 +0.5
1,019,843 - AO353_04710 0.84 +0.8
1,020,119 + +0.1
1,020,119 + +0.7
1,020,119 + +0.8
1,020,119 + -0.9
1,020,119 + -1.3
1,020,120 - -1.7
1,020,120 - +0.8
1,020,120 - -0.2
1,020,120 - +0.5
1,020,120 - -0.5
1,020,120 - +0.6
1,020,120 - +1.0
1,020,120 - -2.9
1,020,189 + -0.8
1,020,189 + -0.5
1,020,207 - AO353_04715 0.11 -1.2
1,020,207 - AO353_04715 0.11 +0.8
1,020,258 + AO353_04715 0.15 +0.1
1,020,259 - AO353_04715 0.16 +0.2
1,020,288 + AO353_04715 0.18 +2.7
1,020,288 + AO353_04715 0.18 +0.5
1,020,288 + AO353_04715 0.18 +1.1
1,020,288 + AO353_04715 0.18 +1.7
1,020,289 - AO353_04715 0.18 +0.1
1,020,408 - AO353_04715 0.29 -1.3
1,020,552 + AO353_04715 0.42 -1.1
1,020,552 + AO353_04715 0.42 +1.1
1,020,553 - AO353_04715 0.42 -1.0
1,020,553 - AO353_04715 0.42 -0.9
1,020,699 + AO353_04715 0.55 +1.1
1,020,699 + AO353_04715 0.55 +0.1
1,020,777 + AO353_04715 0.62 -0.7
1,020,777 + AO353_04715 0.62 +0.8
1,020,778 - AO353_04715 0.62 +2.4
1,020,778 - AO353_04715 0.62 +0.4
1,020,778 - AO353_04715 0.62 -0.5
1,020,778 - AO353_04715 0.62 -3.2
1,020,778 - AO353_04715 0.62 +0.6
1,020,778 - AO353_04715 0.62 +1.1
1,020,778 - AO353_04715 0.62 +0.2
1,020,778 - AO353_04715 0.62 +0.7
1,020,864 + AO353_04715 0.69 -0.4
1,020,864 + AO353_04715 0.69 -1.5
1,020,864 + AO353_04715 0.69 -0.2
1,020,864 + AO353_04715 0.69 +0.7
1,020,865 - AO353_04715 0.69 -1.3

Or see this region's nucleotide sequence