Experiment: acetate 68 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02990 and AO353_02995 are separated by 122 nucleotides AO353_02995 and AO353_03000 are separated by 12 nucleotides AO353_03000 and AO353_03005 are separated by 63 nucleotides
AO353_02990: AO353_02990 - 6,7-dimethyl-8-ribityllumazine synthase, at 634,577 to 635,086
_02990
AO353_02995: AO353_02995 - succinylglutamate desuccinylase, at 635,209 to 636,219
_02995
AO353_03000: AO353_03000 - topoisomerase II, at 636,232 to 636,519
_03000
AO353_03005: AO353_03005 - succinylarginine dihydrolase, at 636,583 to 637,929
_03005
Position (kb) 635
636
637 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.209 kb on + strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.210 kb on - strand at 634.211 kb on + strand at 634.211 kb on + strand at 634.212 kb on - strand at 634.212 kb on - strand at 634.212 kb on - strand at 634.212 kb on - strand at 634.245 kb on + strand at 634.245 kb on + strand at 634.245 kb on + strand at 634.245 kb on + strand at 634.245 kb on + strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.246 kb on - strand at 634.324 kb on + strand at 634.432 kb on + strand at 634.432 kb on + strand at 634.432 kb on + strand at 634.432 kb on + strand at 634.433 kb on - strand at 634.433 kb on - strand at 634.491 kb on + strand at 634.492 kb on - strand at 634.492 kb on - strand at 634.492 kb on - strand at 634.492 kb on - strand at 634.492 kb on - strand at 634.515 kb on + strand at 634.515 kb on + strand at 634.515 kb on + strand at 634.515 kb on + strand at 634.515 kb on + strand at 634.515 kb on + strand at 634.516 kb on - strand at 634.516 kb on - strand at 634.516 kb on - strand at 634.516 kb on - strand at 634.516 kb on - strand at 634.521 kb on + strand at 634.521 kb on + strand at 634.521 kb on + strand at 634.522 kb on - strand at 634.522 kb on - strand at 634.540 kb on - strand at 634.679 kb on - strand, within AO353_02990 at 634.824 kb on + strand, within AO353_02990 at 634.825 kb on - strand, within AO353_02990 at 634.844 kb on + strand, within AO353_02990 at 634.844 kb on + strand, within AO353_02990 at 634.844 kb on + strand, within AO353_02990 at 634.844 kb on + strand, within AO353_02990 at 634.844 kb on + strand, within AO353_02990 at 634.844 kb on + strand, within AO353_02990 at 634.845 kb on - strand, within AO353_02990 at 634.845 kb on - strand, within AO353_02990 at 634.845 kb on - strand, within AO353_02990 at 635.076 kb on + strand at 635.085 kb on - strand at 635.105 kb on + strand at 635.105 kb on + strand at 635.106 kb on - strand at 635.106 kb on - strand at 635.112 kb on - strand at 635.143 kb on + strand at 635.189 kb on + strand at 635.351 kb on + strand, within AO353_02995 at 635.352 kb on - strand, within AO353_02995 at 635.609 kb on + strand, within AO353_02995 at 635.609 kb on + strand, within AO353_02995 at 635.609 kb on + strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.615 kb on + strand, within AO353_02995 at 635.616 kb on - strand, within AO353_02995 at 635.616 kb on - strand, within AO353_02995 at 635.726 kb on + strand, within AO353_02995 at 635.777 kb on + strand, within AO353_02995 at 635.778 kb on - strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.962 kb on - strand, within AO353_02995 at 635.962 kb on - strand, within AO353_02995 at 635.962 kb on - strand, within AO353_02995 at 636.017 kb on - strand, within AO353_02995 at 636.017 kb on - strand, within AO353_02995 at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.220 kb on - strand at 636.220 kb on - strand at 636.313 kb on + strand, within AO353_03000 at 636.313 kb on + strand, within AO353_03000 at 636.314 kb on - strand, within AO353_03000 at 636.314 kb on - strand, within AO353_03000 at 636.322 kb on - strand, within AO353_03000 at 636.523 kb on + strand at 636.541 kb on + strand at 636.541 kb on + strand at 636.541 kb on + strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.603 kb on - strand at 636.619 kb on - strand at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.808 kb on + strand, within AO353_03005 at 636.911 kb on + strand, within AO353_03005 at 636.911 kb on + strand, within AO353_03005 at 636.911 kb on + strand, within AO353_03005 at 636.912 kb on - strand, within AO353_03005 at 637.004 kb on + strand, within AO353_03005 at 637.004 kb on + strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.139 kb on + strand, within AO353_03005 at 637.139 kb on + strand, within AO353_03005 at 637.140 kb on - strand, within AO353_03005
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 68 mM remove 634,209 + -0.6 634,209 + +3.9 634,209 + -0.5 634,209 + -0.6 634,209 + -1.1 634,209 + -1.3 634,209 + -1.1 634,209 + -1.6 634,209 + +1.6 634,209 + -0.2 634,209 + +1.9 634,209 + -1.7 634,209 + -0.1 634,209 + +1.9 634,209 + +0.6 634,209 + -1.1 634,209 + -1.6 634,209 + +0.8 634,210 - -0.1 634,210 - -2.2 634,210 - -1.2 634,210 - -0.1 634,210 - -1.0 634,210 - +0.0 634,210 - -0.1 634,210 - +0.9 634,210 - +2.6 634,210 - +0.8 634,210 - -0.6 634,210 - +0.4 634,210 - -0.6 634,210 - +0.2 634,210 - -0.1 634,210 - +0.8 634,210 - -0.1 634,210 - +0.9 634,210 - -1.6 634,210 - +1.7 634,210 - -1.1 634,210 - -1.1 634,210 - -0.4 634,210 - +0.2 634,210 - -0.5 634,210 - -0.1 634,210 - +0.9 634,211 + -1.9 634,211 + -0.6 634,212 - -0.4 634,212 - +0.9 634,212 - +1.9 634,212 - -0.2 634,245 + -0.1 634,245 + +2.5 634,245 + +2.0 634,245 + -0.6 634,245 + +1.8 634,246 - -2.5 634,246 - -0.1 634,246 - +0.7 634,246 - -0.6 634,246 - +0.2 634,246 - +0.7 634,246 - -1.4 634,246 - +0.4 634,246 - -1.9 634,246 - +1.2 634,246 - -1.4 634,246 - -0.1 634,246 - +1.8 634,246 - -0.1 634,324 + -0.3 634,432 + +0.5 634,432 + +1.5 634,432 + -0.3 634,432 + -1.6 634,433 - +0.9 634,433 - +1.1 634,491 + -0.6 634,492 - +2.5 634,492 - -1.1 634,492 - +0.8 634,492 - +0.3 634,492 - +0.2 634,515 + -0.1 634,515 + -0.1 634,515 + +0.2 634,515 + -1.4 634,515 + +0.9 634,515 + -0.9 634,516 - -0.6 634,516 - -0.1 634,516 - -0.6 634,516 - +2.1 634,516 - -0.6 634,521 + -1.1 634,521 + +0.1 634,521 + -2.9 634,522 - +0.8 634,522 - -1.6 634,540 - -0.1 634,679 - AO353_02990 0.20 +0.4 634,824 + AO353_02990 0.48 +1.2 634,825 - AO353_02990 0.49 +0.4 634,844 + AO353_02990 0.52 -1.6 634,844 + AO353_02990 0.52 -0.1 634,844 + AO353_02990 0.52 -0.6 634,844 + AO353_02990 0.52 -0.6 634,844 + AO353_02990 0.52 +1.6 634,844 + AO353_02990 0.52 +0.2 634,845 - AO353_02990 0.53 +0.4 634,845 - AO353_02990 0.53 -1.0 634,845 - AO353_02990 0.53 -0.4 635,076 + -1.4 635,085 - -1.5 635,105 + +0.5 635,105 + -0.2 635,106 - +1.4 635,106 - -2.6 635,112 - -0.1 635,143 + -2.1 635,189 + -0.1 635,351 + AO353_02995 0.14 -1.9 635,352 - AO353_02995 0.14 -1.4 635,609 + AO353_02995 0.40 -1.9 635,609 + AO353_02995 0.40 -0.1 635,609 + AO353_02995 0.40 +0.4 635,610 - AO353_02995 0.40 -1.1 635,610 - AO353_02995 0.40 -1.8 635,610 - AO353_02995 0.40 +0.0 635,610 - AO353_02995 0.40 -0.6 635,610 - AO353_02995 0.40 +1.5 635,615 + AO353_02995 0.40 -2.1 635,616 - AO353_02995 0.40 +0.9 635,616 - AO353_02995 0.40 -0.6 635,726 + AO353_02995 0.51 -2.1 635,777 + AO353_02995 0.56 -0.1 635,778 - AO353_02995 0.56 -1.0 635,961 + AO353_02995 0.74 -1.6 635,961 + AO353_02995 0.74 -0.4 635,961 + AO353_02995 0.74 -1.5 635,961 + AO353_02995 0.74 -2.6 635,961 + AO353_02995 0.74 -2.4 635,961 + AO353_02995 0.74 -1.3 635,962 - AO353_02995 0.74 -1.1 635,962 - AO353_02995 0.74 +0.7 635,962 - AO353_02995 0.74 -1.1 636,017 - AO353_02995 0.80 -1.2 636,017 - AO353_02995 0.80 -0.1 636,219 + -0.9 636,219 + -0.1 636,219 + +0.9 636,219 + -0.1 636,219 + -0.1 636,219 + -1.6 636,219 + +0.1 636,220 - -0.1 636,220 - -0.4 636,313 + AO353_03000 0.28 +0.4 636,313 + AO353_03000 0.28 +0.6 636,314 - AO353_03000 0.28 +0.6 636,314 - AO353_03000 0.28 -2.2 636,322 - AO353_03000 0.31 -1.3 636,523 + -0.6 636,541 + -1.3 636,541 + +0.4 636,541 + +0.8 636,542 - -0.5 636,542 - +0.2 636,542 - +1.3 636,542 - -0.1 636,542 - -0.1 636,542 - +0.3 636,603 - -0.5 636,619 - -1.4 636,741 - AO353_03005 0.12 -1.6 636,741 - AO353_03005 0.12 -1.1 636,741 - AO353_03005 0.12 -0.6 636,741 - AO353_03005 0.12 -0.1 636,741 - AO353_03005 0.12 -0.1 636,741 - AO353_03005 0.12 -0.1 636,808 + AO353_03005 0.17 +0.6 636,911 + AO353_03005 0.24 -0.6 636,911 + AO353_03005 0.24 +0.7 636,911 + AO353_03005 0.24 +0.9 636,912 - AO353_03005 0.24 -0.3 637,004 + AO353_03005 0.31 +2.9 637,004 + AO353_03005 0.31 -1.6 637,005 - AO353_03005 0.31 -0.5 637,005 - AO353_03005 0.31 +0.7 637,005 - AO353_03005 0.31 -0.2 637,005 - AO353_03005 0.31 +1.5 637,139 + AO353_03005 0.41 -0.1 637,139 + AO353_03005 0.41 -1.2 637,140 - AO353_03005 0.41 +0.5
Or see this region's nucleotide sequence