Experiment: acetate 68 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02305 and AO353_02310 are separated by 65 nucleotides AO353_02310 and AO353_02315 are separated by 223 nucleotides
AO353_02305: AO353_02305 - guanine permease, at 490,398 to 491,747
_02305
AO353_02310: AO353_02310 - lysine transporter LysE, at 491,813 to 492,439
_02310
AO353_02315: AO353_02315 - 5-hydroxyisourate hydrolase, at 492,663 to 493,016
_02315
Position (kb) 491
492
493 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 491.016 kb on + strand, within AO353_02305 at 491.016 kb on + strand, within AO353_02305 at 491.016 kb on + strand, within AO353_02305 at 491.016 kb on + strand, within AO353_02305 at 491.017 kb on - strand, within AO353_02305 at 491.094 kb on + strand, within AO353_02305 at 491.094 kb on + strand, within AO353_02305 at 491.094 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.365 kb on - strand, within AO353_02305 at 491.365 kb on - strand, within AO353_02305 at 491.365 kb on - strand, within AO353_02305 at 491.386 kb on + strand, within AO353_02305 at 491.425 kb on + strand, within AO353_02305 at 491.425 kb on + strand, within AO353_02305 at 491.425 kb on + strand, within AO353_02305 at 491.425 kb on + strand, within AO353_02305 at 491.425 kb on + strand, within AO353_02305 at 491.425 kb on + strand, within AO353_02305 at 491.426 kb on - strand, within AO353_02305 at 491.426 kb on - strand, within AO353_02305 at 491.426 kb on - strand, within AO353_02305 at 491.426 kb on - strand, within AO353_02305 at 491.426 kb on - strand, within AO353_02305 at 491.426 kb on - strand, within AO353_02305 at 491.434 kb on + strand, within AO353_02305 at 491.434 kb on + strand, within AO353_02305 at 491.434 kb on + strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.438 kb on + strand, within AO353_02305 at 491.439 kb on - strand, within AO353_02305 at 491.439 kb on - strand, within AO353_02305 at 491.508 kb on + strand, within AO353_02305 at 491.508 kb on + strand, within AO353_02305 at 491.508 kb on + strand, within AO353_02305 at 491.508 kb on + strand, within AO353_02305 at 491.508 kb on + strand, within AO353_02305 at 491.509 kb on - strand, within AO353_02305 at 491.642 kb on + strand at 491.642 kb on + strand at 491.649 kb on + strand at 491.649 kb on + strand at 491.649 kb on + strand at 491.649 kb on + strand at 491.649 kb on + strand at 491.650 kb on - strand at 491.650 kb on - strand at 491.650 kb on - strand at 491.650 kb on - strand at 491.650 kb on - strand at 491.650 kb on - strand at 491.675 kb on + strand at 491.745 kb on + strand at 491.746 kb on - strand at 491.746 kb on - strand at 491.746 kb on - strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.800 kb on - strand at 491.800 kb on - strand at 491.800 kb on - strand at 491.912 kb on + strand, within AO353_02310 at 491.912 kb on + strand, within AO353_02310 at 491.913 kb on - strand, within AO353_02310 at 491.913 kb on - strand, within AO353_02310 at 491.913 kb on - strand, within AO353_02310 at 491.913 kb on - strand, within AO353_02310 at 491.913 kb on - strand, within AO353_02310 at 491.931 kb on - strand, within AO353_02310 at 491.931 kb on - strand, within AO353_02310 at 491.952 kb on + strand, within AO353_02310 at 491.953 kb on - strand, within AO353_02310 at 491.953 kb on - strand, within AO353_02310 at 492.056 kb on + strand, within AO353_02310 at 492.057 kb on - strand, within AO353_02310 at 492.057 kb on - strand, within AO353_02310 at 492.065 kb on + strand, within AO353_02310 at 492.066 kb on - strand, within AO353_02310 at 492.465 kb on + strand at 492.465 kb on + strand at 492.466 kb on - strand at 492.466 kb on - strand at 492.466 kb on - strand at 492.466 kb on - strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.504 kb on - strand at 492.504 kb on - strand at 492.504 kb on - strand at 492.529 kb on + strand at 492.529 kb on + strand at 492.529 kb on + strand at 492.529 kb on + strand at 492.529 kb on + strand at 492.530 kb on - strand at 492.530 kb on - strand at 492.530 kb on - strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.623 kb on + strand at 492.623 kb on + strand at 492.623 kb on + strand at 492.624 kb on - strand at 492.647 kb on + strand at 492.647 kb on + strand at 492.647 kb on + strand at 492.647 kb on + strand at 492.647 kb on + strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.664 kb on + strand at 492.665 kb on - strand at 492.665 kb on - strand at 492.676 kb on + strand at 492.686 kb on - strand at 492.686 kb on - strand at 492.686 kb on - strand at 492.686 kb on - strand at 492.692 kb on - strand at 492.692 kb on - strand at 492.719 kb on - strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.789 kb on + strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.790 kb on - strand, within AO353_02315 at 492.808 kb on + strand, within AO353_02315 at 492.809 kb on - strand, within AO353_02315 at 492.809 kb on - strand, within AO353_02315 at 492.809 kb on - strand, within AO353_02315 at 492.836 kb on - strand, within AO353_02315 at 492.850 kb on + strand, within AO353_02315 at 492.850 kb on + strand, within AO353_02315 at 493.001 kb on + strand at 493.001 kb on + strand at 493.001 kb on + strand at 493.076 kb on + strand at 493.076 kb on + strand at 493.076 kb on + strand at 493.077 kb on - strand at 493.077 kb on - strand at 493.077 kb on - strand at 493.077 kb on - strand at 493.131 kb on - strand at 493.176 kb on - strand at 493.226 kb on + strand at 493.226 kb on + strand at 493.226 kb on + strand at 493.227 kb on - strand at 493.227 kb on - strand at 493.251 kb on + strand at 493.251 kb on + strand at 493.252 kb on - strand at 493.252 kb on - strand at 493.252 kb on - strand at 493.252 kb on - strand at 493.252 kb on - strand at 493.327 kb on + strand at 493.338 kb on + strand at 493.338 kb on + strand at 493.422 kb on + strand at 493.422 kb on + strand at 493.422 kb on + strand at 493.422 kb on + strand at 493.422 kb on + strand at 493.422 kb on + strand at 493.422 kb on + strand at 493.423 kb on - strand at 493.423 kb on - strand at 493.423 kb on - strand at 493.423 kb on - strand at 493.426 kb on + strand at 493.426 kb on + strand at 493.426 kb on + strand at 493.426 kb on + strand at 493.427 kb on - strand at 493.427 kb on - strand at 493.436 kb on + strand at 493.436 kb on + strand at 493.436 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 68 mM remove 490,835 + AO353_02305 0.32 -1.4 490,835 + AO353_02305 0.32 +1.2 490,835 + AO353_02305 0.32 -0.0 490,835 + AO353_02305 0.32 -0.7 490,835 + AO353_02305 0.32 -0.1 490,835 + AO353_02305 0.32 -1.7 490,835 + AO353_02305 0.32 -1.3 491,016 + AO353_02305 0.46 -0.7 491,016 + AO353_02305 0.46 +0.4 491,016 + AO353_02305 0.46 +0.7 491,016 + AO353_02305 0.46 +0.6 491,017 - AO353_02305 0.46 -0.7 491,094 + AO353_02305 0.52 -0.4 491,094 + AO353_02305 0.52 +1.9 491,094 + AO353_02305 0.52 +2.5 491,364 + AO353_02305 0.72 -0.8 491,364 + AO353_02305 0.72 +1.6 491,364 + AO353_02305 0.72 +0.2 491,364 + AO353_02305 0.72 +0.2 491,364 + AO353_02305 0.72 +0.2 491,364 + AO353_02305 0.72 -0.4 491,364 + AO353_02305 0.72 +0.2 491,364 + AO353_02305 0.72 +1.7 491,364 + AO353_02305 0.72 +1.1 491,365 - AO353_02305 0.72 +0.2 491,365 - AO353_02305 0.72 -0.3 491,365 - AO353_02305 0.72 -0.4 491,386 + AO353_02305 0.73 +0.6 491,425 + AO353_02305 0.76 -0.2 491,425 + AO353_02305 0.76 -0.7 491,425 + AO353_02305 0.76 +0.9 491,425 + AO353_02305 0.76 -0.5 491,425 + AO353_02305 0.76 -1.1 491,425 + AO353_02305 0.76 -1.4 491,426 - AO353_02305 0.76 -0.8 491,426 - AO353_02305 0.76 +0.9 491,426 - AO353_02305 0.76 -0.4 491,426 - AO353_02305 0.76 -0.1 491,426 - AO353_02305 0.76 +0.9 491,426 - AO353_02305 0.76 -0.1 491,434 + AO353_02305 0.77 +1.7 491,434 + AO353_02305 0.77 -1.4 491,434 + AO353_02305 0.77 +1.2 491,435 - AO353_02305 0.77 +0.9 491,435 - AO353_02305 0.77 -0.3 491,435 - AO353_02305 0.77 -0.7 491,435 - AO353_02305 0.77 -1.3 491,435 - AO353_02305 0.77 +1.3 491,435 - AO353_02305 0.77 -1.6 491,435 - AO353_02305 0.77 -0.1 491,435 - AO353_02305 0.77 -0.1 491,438 + AO353_02305 0.77 +0.6 491,439 - AO353_02305 0.77 -0.2 491,439 - AO353_02305 0.77 -0.2 491,508 + AO353_02305 0.82 -1.6 491,508 + AO353_02305 0.82 +1.9 491,508 + AO353_02305 0.82 -0.1 491,508 + AO353_02305 0.82 -0.1 491,508 + AO353_02305 0.82 +0.7 491,509 - AO353_02305 0.82 +0.1 491,642 + -1.9 491,642 + +0.9 491,649 + +0.3 491,649 + +0.1 491,649 + -0.9 491,649 + +0.2 491,649 + -0.6 491,650 - +2.0 491,650 - -0.1 491,650 - -2.6 491,650 - +1.5 491,650 - +0.9 491,650 - +1.0 491,675 + +0.0 491,745 + -0.3 491,746 - +0.2 491,746 - +2.9 491,746 - +1.1 491,799 + -0.1 491,799 + +0.1 491,799 + -1.4 491,799 + -1.7 491,799 + +1.3 491,799 + -0.9 491,799 + +0.9 491,799 + +0.2 491,800 - -0.6 491,800 - +0.7 491,800 - +0.8 491,912 + AO353_02310 0.16 -0.4 491,912 + AO353_02310 0.16 -1.1 491,913 - AO353_02310 0.16 -1.2 491,913 - AO353_02310 0.16 +1.9 491,913 - AO353_02310 0.16 +2.3 491,913 - AO353_02310 0.16 -1.1 491,913 - AO353_02310 0.16 -0.1 491,931 - AO353_02310 0.19 +0.9 491,931 - AO353_02310 0.19 -1.4 491,952 + AO353_02310 0.22 -1.1 491,953 - AO353_02310 0.22 +0.7 491,953 - AO353_02310 0.22 +0.2 492,056 + AO353_02310 0.39 +0.5 492,057 - AO353_02310 0.39 +0.2 492,057 - AO353_02310 0.39 +0.9 492,065 + AO353_02310 0.40 +1.0 492,066 - AO353_02310 0.40 +0.9 492,465 + +0.2 492,465 + -0.1 492,466 - -0.1 492,466 - +1.0 492,466 - -0.7 492,466 - -0.3 492,503 + -0.1 492,503 + +0.2 492,503 + -0.6 492,503 + +0.2 492,503 + +0.3 492,503 + -0.7 492,504 - +0.3 492,504 - +0.2 492,504 - -1.1 492,529 + -0.9 492,529 + -0.2 492,529 + -0.6 492,529 + +0.2 492,529 + +0.5 492,530 - -1.1 492,530 - +1.6 492,530 - +1.8 492,621 + -0.7 492,621 + +0.9 492,621 + -0.9 492,621 + +0.9 492,621 + -0.1 492,621 + -0.1 492,621 + +0.4 492,621 + +0.8 492,621 + -0.1 492,621 + -0.1 492,621 + -0.9 492,621 + +0.4 492,621 + +0.6 492,622 - +0.9 492,622 - -1.4 492,622 - +0.9 492,622 - +2.1 492,622 - +0.6 492,622 - -0.1 492,622 - -1.8 492,622 - -0.8 492,622 - -0.7 492,623 + -1.1 492,623 + -0.9 492,623 + -1.9 492,624 - -0.8 492,647 + +0.9 492,647 + +0.9 492,647 + +1.9 492,647 + -0.7 492,647 + -0.3 492,648 - +0.2 492,648 - +0.2 492,648 - -1.3 492,648 - +1.1 492,648 - +0.6 492,648 - +0.7 492,648 - -0.7 492,664 + -1.0 492,665 - -1.9 492,665 - +0.3 492,676 + -0.1 492,686 - -0.7 492,686 - +0.6 492,686 - +2.5 492,686 - -1.1 492,692 - -0.1 492,692 - +1.3 492,719 - AO353_02315 0.16 -0.5 492,789 + AO353_02315 0.36 +1.6 492,789 + AO353_02315 0.36 -0.1 492,789 + AO353_02315 0.36 -0.1 492,789 + AO353_02315 0.36 +1.9 492,789 + AO353_02315 0.36 +1.5 492,789 + AO353_02315 0.36 +0.4 492,789 + AO353_02315 0.36 +0.2 492,789 + AO353_02315 0.36 -0.3 492,789 + AO353_02315 0.36 -0.3 492,789 + AO353_02315 0.36 +0.2 492,789 + AO353_02315 0.36 -0.8 492,789 + AO353_02315 0.36 +0.9 492,789 + AO353_02315 0.36 -0.0 492,789 + AO353_02315 0.36 -1.7 492,790 - AO353_02315 0.36 +0.6 492,790 - AO353_02315 0.36 +0.9 492,790 - AO353_02315 0.36 -2.3 492,790 - AO353_02315 0.36 +0.9 492,790 - AO353_02315 0.36 +1.9 492,790 - AO353_02315 0.36 +0.9 492,790 - AO353_02315 0.36 -0.2 492,790 - AO353_02315 0.36 +0.3 492,790 - AO353_02315 0.36 +1.9 492,790 - AO353_02315 0.36 -0.7 492,808 + AO353_02315 0.41 -0.9 492,809 - AO353_02315 0.41 +0.9 492,809 - AO353_02315 0.41 -0.1 492,809 - AO353_02315 0.41 +0.2 492,836 - AO353_02315 0.49 +1.4 492,850 + AO353_02315 0.53 -1.8 492,850 + AO353_02315 0.53 +0.3 493,001 + +0.5 493,001 + -0.5 493,001 + +0.5 493,076 + -1.4 493,076 + -0.1 493,076 + -0.5 493,077 - -1.0 493,077 - -0.3 493,077 - +1.6 493,077 - +2.1 493,131 - +0.9 493,176 - -0.1 493,226 + -0.1 493,226 + +0.9 493,226 + -0.7 493,227 - +0.6 493,227 - -1.7 493,251 + +2.2 493,251 + -1.8 493,252 - -1.1 493,252 - -0.1 493,252 - +2.5 493,252 - +1.2 493,252 - +2.3 493,327 + +1.6 493,338 + -0.1 493,338 + -0.4 493,422 + -0.2 493,422 + +0.4 493,422 + -0.1 493,422 + +0.9 493,422 + -0.4 493,422 + +1.3 493,422 + -1.1 493,423 - -0.1 493,423 - -2.6 493,423 - -1.8 493,423 - -0.3 493,426 + -2.6 493,426 + -0.7 493,426 + -0.1 493,426 + -2.3 493,427 - +0.3 493,427 - -2.1 493,436 + +0.3 493,436 + +0.3 493,436 + -0.6
Or see this region's nucleotide sequence