Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36570

Experiment: R2A with Chlorite 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36565 and RR42_RS36570 are separated by 102 nucleotidesRR42_RS36570 and RR42_RS36575 overlap by 4 nucleotidesRR42_RS36575 and RR42_RS36580 are separated by 72 nucleotides RR42_RS36565: RR42_RS36565 - LysR family transcriptional regulator, at 3,658,662 to 3,659,564 _RS36565 RR42_RS36570: RR42_RS36570 - prevent-host-death protein, at 3,659,667 to 3,659,945 _RS36570 RR42_RS36575: RR42_RS36575 - hypothetical protein, at 3,659,942 to 3,660,268 _RS36575 RR42_RS36580: RR42_RS36580 - Zn-dependent protease, at 3,660,341 to 3,661,669 _RS36580 Position (kb) 3659 3660Strain fitness (log2 ratio) -2 -1 0 1at 3658.668 kb on + strandat 3658.668 kb on + strandat 3658.668 kb on + strandat 3658.668 kb on + strandat 3658.669 kb on - strandat 3658.921 kb on - strand, within RR42_RS36565at 3659.231 kb on + strand, within RR42_RS36565at 3659.232 kb on - strand, within RR42_RS36565at 3659.396 kb on + strand, within RR42_RS36565at 3659.397 kb on - strand, within RR42_RS36565at 3659.397 kb on - strand, within RR42_RS36565at 3659.412 kb on + strand, within RR42_RS36565at 3659.438 kb on + strand, within RR42_RS36565at 3659.439 kb on - strand, within RR42_RS36565at 3659.473 kb on + strand, within RR42_RS36565at 3659.474 kb on - strandat 3659.474 kb on - strandat 3659.474 kb on - strandat 3659.474 kb on - strandat 3659.474 kb on - strandat 3659.533 kb on - strandat 3659.630 kb on - strandat 3659.808 kb on + strand, within RR42_RS36570at 3659.809 kb on - strand, within RR42_RS36570at 3659.927 kb on + strandat 3660.164 kb on + strand, within RR42_RS36575at 3660.165 kb on - strand, within RR42_RS36575at 3660.194 kb on + strand, within RR42_RS36575at 3660.194 kb on + strand, within RR42_RS36575at 3660.194 kb on + strand, within RR42_RS36575at 3660.194 kb on + strand, within RR42_RS36575at 3660.194 kb on + strand, within RR42_RS36575at 3660.195 kb on - strand, within RR42_RS36575at 3660.195 kb on - strand, within RR42_RS36575at 3660.195 kb on - strand, within RR42_RS36575at 3660.195 kb on - strand, within RR42_RS36575at 3660.195 kb on - strand, within RR42_RS36575at 3660.195 kb on - strand, within RR42_RS36575at 3660.195 kb on - strand, within RR42_RS36575at 3660.196 kb on + strand, within RR42_RS36575at 3660.197 kb on - strand, within RR42_RS36575at 3660.356 kb on + strandat 3660.411 kb on + strandat 3660.411 kb on + strandat 3660.412 kb on - strandat 3660.412 kb on - strandat 3660.415 kb on + strandat 3660.415 kb on + strandat 3660.415 kb on + strandat 3660.416 kb on - strandat 3660.416 kb on - strandat 3660.478 kb on + strand, within RR42_RS36580at 3660.479 kb on - strand, within RR42_RS36580at 3660.479 kb on - strand, within RR42_RS36580at 3660.480 kb on + strand, within RR42_RS36580at 3660.480 kb on + strand, within RR42_RS36580at 3660.480 kb on + strand, within RR42_RS36580at 3660.480 kb on + strand, within RR42_RS36580at 3660.480 kb on + strand, within RR42_RS36580at 3660.480 kb on + strand, within RR42_RS36580at 3660.480 kb on + strand, within RR42_RS36580at 3660.480 kb on + strand, within RR42_RS36580at 3660.481 kb on - strand, within RR42_RS36580at 3660.481 kb on - strand, within RR42_RS36580at 3660.481 kb on - strand, within RR42_RS36580at 3660.603 kb on + strand, within RR42_RS36580at 3660.617 kb on + strand, within RR42_RS36580at 3660.617 kb on + strand, within RR42_RS36580at 3660.617 kb on + strand, within RR42_RS36580at 3660.618 kb on - strand, within RR42_RS36580at 3660.618 kb on - strand, within RR42_RS36580at 3660.618 kb on - strand, within RR42_RS36580at 3660.618 kb on - strand, within RR42_RS36580at 3660.618 kb on - strand, within RR42_RS36580at 3660.618 kb on - strand, within RR42_RS36580at 3660.618 kb on - strand, within RR42_RS36580at 3660.618 kb on - strand, within RR42_RS36580at 3660.618 kb on - strand, within RR42_RS36580at 3660.618 kb on - strand, within RR42_RS36580at 3660.618 kb on - strand, within RR42_RS36580at 3660.619 kb on + strand, within RR42_RS36580at 3660.619 kb on + strand, within RR42_RS36580at 3660.620 kb on - strand, within RR42_RS36580at 3660.620 kb on - strand, within RR42_RS36580at 3660.620 kb on - strand, within RR42_RS36580at 3660.621 kb on + strand, within RR42_RS36580at 3660.621 kb on + strand, within RR42_RS36580at 3660.621 kb on + strand, within RR42_RS36580at 3660.621 kb on + strand, within RR42_RS36580at 3660.732 kb on + strand, within RR42_RS36580at 3660.897 kb on + strand, within RR42_RS36580at 3660.898 kb on - strand, within RR42_RS36580

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM
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3,658,668 + -1.8
3,658,668 + +0.3
3,658,668 + +0.4
3,658,668 + +1.5
3,658,669 - +0.4
3,658,921 - RR42_RS36565 0.29 +0.2
3,659,231 + RR42_RS36565 0.63 +0.5
3,659,232 - RR42_RS36565 0.63 -0.2
3,659,396 + RR42_RS36565 0.81 +0.8
3,659,397 - RR42_RS36565 0.81 -0.3
3,659,397 - RR42_RS36565 0.81 -0.2
3,659,412 + RR42_RS36565 0.83 -0.4
3,659,438 + RR42_RS36565 0.86 +0.2
3,659,439 - RR42_RS36565 0.86 -0.0
3,659,473 + RR42_RS36565 0.90 -0.0
3,659,474 - -0.0
3,659,474 - +0.6
3,659,474 - +1.0
3,659,474 - +0.6
3,659,474 - -1.0
3,659,533 - +0.3
3,659,630 - +0.0
3,659,808 + RR42_RS36570 0.51 -1.3
3,659,809 - RR42_RS36570 0.51 -0.3
3,659,927 + -0.2
3,660,164 + RR42_RS36575 0.68 -0.3
3,660,165 - RR42_RS36575 0.68 -0.5
3,660,194 + RR42_RS36575 0.77 +0.6
3,660,194 + RR42_RS36575 0.77 +1.0
3,660,194 + RR42_RS36575 0.77 +0.3
3,660,194 + RR42_RS36575 0.77 +1.4
3,660,194 + RR42_RS36575 0.77 -1.1
3,660,195 - RR42_RS36575 0.77 -0.1
3,660,195 - RR42_RS36575 0.77 -1.0
3,660,195 - RR42_RS36575 0.77 +1.0
3,660,195 - RR42_RS36575 0.77 +1.2
3,660,195 - RR42_RS36575 0.77 +1.3
3,660,195 - RR42_RS36575 0.77 -0.2
3,660,195 - RR42_RS36575 0.77 -1.0
3,660,196 + RR42_RS36575 0.78 -1.0
3,660,197 - RR42_RS36575 0.78 -0.5
3,660,356 + -1.9
3,660,411 + -0.6
3,660,411 + -0.3
3,660,412 - -0.1
3,660,412 - -0.1
3,660,415 + -1.8
3,660,415 + +0.8
3,660,415 + -1.0
3,660,416 - -0.8
3,660,416 - +0.6
3,660,478 + RR42_RS36580 0.10 +0.5
3,660,479 - RR42_RS36580 0.10 -0.6
3,660,479 - RR42_RS36580 0.10 -1.3
3,660,480 + RR42_RS36580 0.10 -1.5
3,660,480 + RR42_RS36580 0.10 +0.1
3,660,480 + RR42_RS36580 0.10 -0.8
3,660,480 + RR42_RS36580 0.10 +0.1
3,660,480 + RR42_RS36580 0.10 -0.2
3,660,480 + RR42_RS36580 0.10 -0.5
3,660,480 + RR42_RS36580 0.10 -0.4
3,660,480 + RR42_RS36580 0.10 +0.4
3,660,481 - RR42_RS36580 0.11 -0.4
3,660,481 - RR42_RS36580 0.11 -0.3
3,660,481 - RR42_RS36580 0.11 -1.7
3,660,603 + RR42_RS36580 0.20 +0.4
3,660,617 + RR42_RS36580 0.21 -0.3
3,660,617 + RR42_RS36580 0.21 +0.1
3,660,617 + RR42_RS36580 0.21 -0.2
3,660,618 - RR42_RS36580 0.21 -0.2
3,660,618 - RR42_RS36580 0.21 +0.7
3,660,618 - RR42_RS36580 0.21 +0.3
3,660,618 - RR42_RS36580 0.21 -1.0
3,660,618 - RR42_RS36580 0.21 +0.3
3,660,618 - RR42_RS36580 0.21 -0.4
3,660,618 - RR42_RS36580 0.21 -0.1
3,660,618 - RR42_RS36580 0.21 +0.0
3,660,618 - RR42_RS36580 0.21 +1.1
3,660,618 - RR42_RS36580 0.21 +0.2
3,660,618 - RR42_RS36580 0.21 -1.9
3,660,619 + RR42_RS36580 0.21 +0.3
3,660,619 + RR42_RS36580 0.21 -1.3
3,660,620 - RR42_RS36580 0.21 +0.5
3,660,620 - RR42_RS36580 0.21 -0.2
3,660,620 - RR42_RS36580 0.21 -0.1
3,660,621 + RR42_RS36580 0.21 -0.9
3,660,621 + RR42_RS36580 0.21 -1.4
3,660,621 + RR42_RS36580 0.21 -0.3
3,660,621 + RR42_RS36580 0.21 -0.9
3,660,732 + RR42_RS36580 0.29 +0.9
3,660,897 + RR42_RS36580 0.42 +0.0
3,660,898 - RR42_RS36580 0.42 +0.5

Or see this region's nucleotide sequence