Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33630

Experiment: R2A with Chlorite 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chlorite 4 mM
2,970,247	+		RR42_RS33625	0.11	-1.2
2,970,265	+		RR42_RS33625	0.13	-0.4
2,970,332	+		RR42_RS33625	0.21	+0.6
2,970,541	+		RR42_RS33625	0.46	+0.2
2,970,577	+		RR42_RS33625	0.50	-0.9
2,970,578	-		RR42_RS33625	0.50	-1.0
2,970,578	-		RR42_RS33625	0.50	+0.4
2,970,587	-		RR42_RS33625	0.52	-0.3
2,970,607	+		RR42_RS33625	0.54	+0.0
2,970,607	+		RR42_RS33625	0.54	-1.3
2,970,608	+		RR42_RS33625	0.54	-0.6
2,970,608	-		RR42_RS33625	0.54	-0.8
2,970,608	-		RR42_RS33625	0.54	-0.0
2,970,694	+		RR42_RS33625	0.64	+0.3
2,970,694	+		RR42_RS33625	0.64	-0.0
2,970,694	+		RR42_RS33625	0.64	-0.8
2,970,694	+		RR42_RS33625	0.64	-0.1
2,970,695	-		RR42_RS33625	0.64	+0.3
2,970,695	-		RR42_RS33625	0.64	+0.5
2,970,695	-		RR42_RS33625	0.64	+0.6
2,970,716	-		RR42_RS33625	0.67	+0.3
2,970,716	-		RR42_RS33625	0.67	-0.2
2,970,736	-		RR42_RS33625	0.69	+0.4
2,970,796	+		RR42_RS33625	0.76	+0.2
2,970,866	-		RR42_RS33625	0.85	+0.4
2,970,866	-		RR42_RS33625	0.85	+0.6
2,970,908	-		RR42_RS33625	0.90	-1.3
2,970,952	+				+0.2
2,970,952	+				-0.7
2,970,952	+				+0.3
2,970,953	-				-0.3
2,971,106	+				-0.1
2,971,163	+				+1.3
2,971,164	-				-1.5
2,971,164	-				-0.6
2,971,174	-				+0.0
2,971,278	-				-0.4
2,971,312	+				+0.3
2,971,312	+				+1.1
2,971,312	+				-0.2
2,971,313	-				+0.2
2,971,313	-				+0.6
2,971,313	-				-0.0
2,971,313	-				+1.2
2,971,343	+		RR42_RS33630	0.11	-3.0
2,971,344	-		RR42_RS33630	0.11	+0.1
2,971,363	+		RR42_RS33630	0.13	+0.0
2,971,363	+		RR42_RS33630	0.13	-0.9
2,971,363	+		RR42_RS33630	0.13	-0.5
2,971,363	+		RR42_RS33630	0.13	+0.1
2,971,364	-		RR42_RS33630	0.13	-0.1
2,971,422	-		RR42_RS33630	0.18	-0.1
2,971,422	-		RR42_RS33630	0.18	+0.3
2,971,523	+		RR42_RS33630	0.28	-0.6
2,971,523	+		RR42_RS33630	0.28	-0.8
2,971,524	-		RR42_RS33630	0.28	+0.2
2,971,555	+		RR42_RS33630	0.30	-0.1
2,971,607	+		RR42_RS33630	0.35	-0.4
2,971,607	+		RR42_RS33630	0.35	-0.0
2,971,607	+		RR42_RS33630	0.35	-0.1
2,971,607	+		RR42_RS33630	0.35	+0.8
2,971,608	-		RR42_RS33630	0.35	-0.3
2,971,608	-		RR42_RS33630	0.35	-0.1
2,971,608	-		RR42_RS33630	0.35	-0.1
2,971,609	+		RR42_RS33630	0.35	-0.2
2,971,665	+		RR42_RS33630	0.41	-0.3
2,971,732	+		RR42_RS33630	0.47	-0.4
2,971,732	+		RR42_RS33630	0.47	-2.4
2,971,732	+		RR42_RS33630	0.47	-0.5
2,971,733	-		RR42_RS33630	0.47	+0.1
2,971,733	-		RR42_RS33630	0.47	+0.1
2,971,733	-		RR42_RS33630	0.47	-2.1
2,971,837	+		RR42_RS33630	0.57	+0.3
2,971,837	+		RR42_RS33630	0.57	-0.6
2,971,838	-		RR42_RS33630	0.57	+0.3
2,971,886	-		RR42_RS33630	0.61	-0.4
2,971,917	-		RR42_RS33630	0.64	-0.0
2,971,942	+		RR42_RS33630	0.66	+0.2
2,971,975	+		RR42_RS33630	0.69	-0.5
2,972,074	+		RR42_RS33630	0.78	+0.0
2,972,143	+		RR42_RS33630	0.85	+0.0
2,972,143	+		RR42_RS33630	0.85	+0.2
2,972,143	+		RR42_RS33630	0.85	-0.1
2,972,144	-		RR42_RS33630	0.85	-0.7
2,972,144	-		RR42_RS33630	0.85	-0.5
2,972,144	-		RR42_RS33630	0.85	-0.8
2,972,144	-		RR42_RS33630	0.85	-0.1
2,972,306	-				-0.3
2,972,458	+		RR42_RS33635	0.16	-1.0
2,972,511	-		RR42_RS33635	0.24	-0.1
2,972,520	+		RR42_RS33635	0.25	+1.0
2,972,520	+		RR42_RS33635	0.25	-0.7
2,972,520	+		RR42_RS33635	0.25	-0.2
2,972,520	+		RR42_RS33635	0.25	-1.1
2,972,520	+		RR42_RS33635	0.25	+1.2
2,972,521	-		RR42_RS33635	0.25	-0.3
2,972,521	-		RR42_RS33635	0.25	-0.2
2,972,521	-		RR42_RS33635	0.25	+0.1
2,972,521	-		RR42_RS33635	0.25	-0.0
2,972,521	-		RR42_RS33635	0.25	+0.4
2,972,585	+		RR42_RS33635	0.34	+0.7
2,972,585	+		RR42_RS33635	0.34	-1.6
2,972,585	+		RR42_RS33635	0.34	+0.6
2,972,586	-		RR42_RS33635	0.34	+0.1
2,972,670	+		RR42_RS33635	0.47	-0.3
2,972,670	+		RR42_RS33635	0.47	-0.1
2,972,670	+		RR42_RS33635	0.47	-0.1
2,972,671	-		RR42_RS33635	0.47	-0.5
2,972,783	-		RR42_RS33635	0.63	+0.8
2,972,816	+		RR42_RS33635	0.68	-0.1
2,972,850	+		RR42_RS33635	0.73	+0.1
2,972,850	+		RR42_RS33635	0.73	+0.1
2,972,864	+		RR42_RS33635	0.75	-0.0
2,972,865	-		RR42_RS33635	0.75	-0.6
2,972,932	+		RR42_RS33635	0.85	-1.5
2,972,932	+		RR42_RS33635	0.85	+0.1
2,972,932	+		RR42_RS33635	0.85	+0.2
2,972,932	+		RR42_RS33635	0.85	+0.2
2,972,933	-		RR42_RS33635	0.85	-0.0
2,972,933	-		RR42_RS33635	0.85	+1.0
2,972,946	+		RR42_RS33635	0.87	+1.0
2,972,947	-		RR42_RS33635	0.87	+0.3
2,972,947	-		RR42_RS33635	0.87	-0.1
2,972,947	-		RR42_RS33635	0.87	+1.0
2,972,988	+				+0.1
2,972,988	+				-0.5
2,972,989	-				-2.2
2,973,009	-				-0.4
2,973,009	-				-0.7
2,973,234	-				+0.4
2,973,283	-				+1.0
2,973,288	+				-0.3