Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27910

Experiment: R2A with Chlorite 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27905 and RR42_RS27910 are separated by 152 nucleotidesRR42_RS27910 and RR42_RS27915 are separated by 213 nucleotides RR42_RS27905: RR42_RS27905 - AraC family transcriptional regulator, at 1,623,164 to 1,623,811 _RS27905 RR42_RS27910: RR42_RS27910 - Crp/Fnr family transcriptional regulator, at 1,623,964 to 1,624,665 _RS27910 RR42_RS27915: RR42_RS27915 - acyl-CoA synthetase, at 1,624,879 to 1,626,516 _RS27915 Position (kb) 1623 1624 1625Strain fitness (log2 ratio) -1 0 1at 1623.066 kb on + strandat 1623.067 kb on - strandat 1623.067 kb on - strandat 1623.086 kb on - strandat 1623.165 kb on + strandat 1623.165 kb on + strandat 1623.351 kb on + strand, within RR42_RS27905at 1623.352 kb on - strand, within RR42_RS27905at 1623.352 kb on - strand, within RR42_RS27905at 1623.352 kb on - strand, within RR42_RS27905at 1623.692 kb on + strand, within RR42_RS27905at 1623.693 kb on - strand, within RR42_RS27905at 1623.875 kb on + strandat 1623.965 kb on + strandat 1624.026 kb on - strandat 1624.309 kb on - strand, within RR42_RS27910at 1624.461 kb on - strand, within RR42_RS27910at 1624.666 kb on - strandat 1624.804 kb on + strandat 1624.972 kb on + strandat 1624.973 kb on - strandat 1624.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM
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1,623,066 + -0.6
1,623,067 - +0.0
1,623,067 - -0.3
1,623,086 - -1.4
1,623,165 + -0.8
1,623,165 + +0.2
1,623,351 + RR42_RS27905 0.29 +0.1
1,623,352 - RR42_RS27905 0.29 -0.5
1,623,352 - RR42_RS27905 0.29 +0.3
1,623,352 - RR42_RS27905 0.29 -0.6
1,623,692 + RR42_RS27905 0.81 -1.1
1,623,693 - RR42_RS27905 0.82 +0.3
1,623,875 + +0.2
1,623,965 + -0.2
1,624,026 - -0.3
1,624,309 - RR42_RS27910 0.49 -0.3
1,624,461 - RR42_RS27910 0.71 -0.5
1,624,666 - +0.2
1,624,804 + -0.0
1,624,972 + +0.1
1,624,973 - +0.2
1,624,973 - -0.3

Or see this region's nucleotide sequence