Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25850

Experiment: R2A with Chlorite 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chlorite 4 mM
1,138,635	+		RR42_RS25845	0.71	-0.1
1,138,635	+		RR42_RS25845	0.71	+1.0
1,138,636	-		RR42_RS25845	0.71	+0.9
1,138,636	-		RR42_RS25845	0.71	+0.6
1,138,686	+		RR42_RS25845	0.74	+0.9
1,138,686	+		RR42_RS25845	0.74	+1.3
1,138,686	+		RR42_RS25845	0.74	-0.7
1,138,686	+		RR42_RS25845	0.74	+0.2
1,138,687	-		RR42_RS25845	0.74	-0.5
1,138,932	+		RR42_RS25845	0.90	-0.5
1,138,932	+		RR42_RS25845	0.90	+0.6
1,138,933	-		RR42_RS25845	0.90	+0.2
1,138,933	-		RR42_RS25845	0.90	-1.0
1,139,031	+				+0.3
1,139,031	+				-2.5
1,139,067	-				+0.7
1,139,094	+				+0.0
1,139,100	+				-0.6
1,139,100	+				+0.2
1,139,101	-				-1.7
1,139,101	-				+0.5
1,139,101	-				-0.6
1,139,101	-				-0.3
1,139,101	-				-0.7
1,139,104	-				-0.1
1,139,104	-				+0.1
1,139,195	+				+0.2
1,139,196	-				-0.0
1,139,371	+				+0.8
1,139,372	-				+0.1
1,139,372	-				+0.2
1,139,573	-				+0.1
1,139,587	+				+0.6
1,139,587	+				-0.7
1,139,615	-				+0.7
1,139,705	+				-1.0
1,139,705	+				+0.1
1,139,706	-				+0.1
1,139,821	+		RR42_RS25850	0.17	+0.2
1,139,821	+		RR42_RS25850	0.17	-0.7
1,139,821	+		RR42_RS25850	0.17	-0.0
1,139,821	+		RR42_RS25850	0.17	+0.0
1,139,822	-		RR42_RS25850	0.17	+0.0
1,139,822	-		RR42_RS25850	0.17	-0.9
1,139,822	-		RR42_RS25850	0.17	+0.2
1,139,907	-		RR42_RS25850	0.23	-0.6
1,139,907	-		RR42_RS25850	0.23	-0.1
1,139,976	+		RR42_RS25850	0.28	-1.1
1,139,977	-		RR42_RS25850	0.28	-0.0
1,140,102	-		RR42_RS25850	0.37	-0.2
1,140,109	-		RR42_RS25850	0.38	+0.1
1,140,899	+				-0.2
1,140,899	+				+0.1
1,140,899	+				+1.0
1,140,900	-				-0.2
1,140,956	+				+0.2
1,140,956	+				+0.4
1,140,957	-				-0.3
1,140,957	-				+0.1
1,141,265	-		RR42_RS25855	0.20	+2.1
1,141,349	+		RR42_RS25855	0.26	+0.3
1,141,568	+		RR42_RS25855	0.42	-0.6
1,141,569	-		RR42_RS25855	0.42	+0.6
1,141,581	+		RR42_RS25855	0.43	+0.1
1,141,628	+		RR42_RS25855	0.46	+1.0
1,141,629	-		RR42_RS25855	0.46	-0.5
1,141,634	-		RR42_RS25855	0.46	+0.1
1,141,697	-		RR42_RS25855	0.51	-0.5
1,141,780	+		RR42_RS25855	0.57	-0.3
1,141,781	-		RR42_RS25855	0.57	-0.5
1,141,865	+		RR42_RS25855	0.63	-3.6
1,141,866	-		RR42_RS25855	0.63	+2.2