Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25835 and RR42_RS25840 are separated by 4 nucleotides RR42_RS25840 and RR42_RS25845 are separated by 637 nucleotides
RR42_RS25835: RR42_RS25835 - cytochrome D ubiquinol oxidase subunit I, at 1,134,874 to 1,136,253
_RS25835
RR42_RS25840: RR42_RS25840 - ArsR family transcriptional regulator, at 1,136,258 to 1,136,875
_RS25840
RR42_RS25845: RR42_RS25845 - isocitrate lyase, at 1,137,513 to 1,139,093
_RS25845
Position (kb) 1136
1137 Strain fitness (log2 ratio) -2
-1
0
1 at 1135.371 kb on - strand, within RR42_RS25835 at 1135.692 kb on + strand, within RR42_RS25835 at 1135.693 kb on - strand, within RR42_RS25835 at 1135.693 kb on - strand, within RR42_RS25835 at 1135.693 kb on - strand, within RR42_RS25835 at 1135.693 kb on - strand, within RR42_RS25835 at 1135.866 kb on + strand, within RR42_RS25835 at 1135.867 kb on - strand, within RR42_RS25835 at 1135.992 kb on + strand, within RR42_RS25835 at 1135.992 kb on + strand, within RR42_RS25835 at 1135.995 kb on - strand, within RR42_RS25835 at 1136.121 kb on + strand at 1136.121 kb on + strand at 1136.122 kb on - strand at 1136.259 kb on + strand at 1136.260 kb on - strand at 1136.469 kb on + strand, within RR42_RS25840 at 1136.470 kb on - strand, within RR42_RS25840 at 1136.470 kb on - strand, within RR42_RS25840 at 1136.470 kb on - strand, within RR42_RS25840 at 1136.470 kb on - strand, within RR42_RS25840 at 1136.631 kb on + strand, within RR42_RS25840 at 1136.632 kb on - strand, within RR42_RS25840 at 1136.784 kb on + strand, within RR42_RS25840 at 1136.784 kb on + strand, within RR42_RS25840 at 1136.785 kb on - strand, within RR42_RS25840 at 1136.914 kb on - strand at 1137.035 kb on + strand at 1137.217 kb on + strand at 1137.217 kb on + strand at 1137.217 kb on + strand at 1137.217 kb on + strand at 1137.218 kb on - strand at 1137.218 kb on - strand at 1137.253 kb on + strand at 1137.253 kb on + strand at 1137.433 kb on + strand at 1137.434 kb on - strand at 1137.501 kb on + strand at 1137.597 kb on + strand at 1137.654 kb on + strand at 1137.711 kb on + strand, within RR42_RS25845 at 1137.711 kb on + strand, within RR42_RS25845 at 1137.711 kb on + strand, within RR42_RS25845 at 1137.711 kb on + strand, within RR42_RS25845 at 1137.712 kb on - strand, within RR42_RS25845 at 1137.807 kb on + strand, within RR42_RS25845 at 1137.807 kb on + strand, within RR42_RS25845 at 1137.808 kb on - strand, within RR42_RS25845
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 1,135,371 - RR42_RS25835 0.36 +0.5 1,135,692 + RR42_RS25835 0.59 -1.4 1,135,693 - RR42_RS25835 0.59 -0.9 1,135,693 - RR42_RS25835 0.59 -0.2 1,135,693 - RR42_RS25835 0.59 -0.9 1,135,693 - RR42_RS25835 0.59 +0.5 1,135,866 + RR42_RS25835 0.72 -0.5 1,135,867 - RR42_RS25835 0.72 -1.4 1,135,992 + RR42_RS25835 0.81 -0.4 1,135,992 + RR42_RS25835 0.81 +0.6 1,135,995 - RR42_RS25835 0.81 -0.0 1,136,121 + -1.1 1,136,121 + -0.1 1,136,122 - -0.3 1,136,259 + -1.1 1,136,260 - -0.6 1,136,469 + RR42_RS25840 0.34 -0.3 1,136,470 - RR42_RS25840 0.34 -0.0 1,136,470 - RR42_RS25840 0.34 -0.9 1,136,470 - RR42_RS25840 0.34 -1.9 1,136,470 - RR42_RS25840 0.34 -0.7 1,136,631 + RR42_RS25840 0.60 -1.7 1,136,632 - RR42_RS25840 0.61 -0.3 1,136,784 + RR42_RS25840 0.85 -2.0 1,136,784 + RR42_RS25840 0.85 -1.4 1,136,785 - RR42_RS25840 0.85 -1.8 1,136,914 - +0.6 1,137,035 + -0.0 1,137,217 + -0.4 1,137,217 + +0.0 1,137,217 + +0.4 1,137,217 + +0.5 1,137,218 - +0.3 1,137,218 - -0.9 1,137,253 + -0.3 1,137,253 + -0.7 1,137,433 + +0.5 1,137,434 - +1.5 1,137,501 + +0.4 1,137,597 + +1.7 1,137,654 + -0.0 1,137,711 + RR42_RS25845 0.13 +0.1 1,137,711 + RR42_RS25845 0.13 -0.1 1,137,711 + RR42_RS25845 0.13 +0.5 1,137,711 + RR42_RS25845 0.13 +0.8 1,137,712 - RR42_RS25845 0.13 +0.6 1,137,807 + RR42_RS25845 0.19 +0.0 1,137,807 + RR42_RS25845 0.19 +0.5 1,137,808 - RR42_RS25845 0.19 -0.1
Or see this region's nucleotide sequence