Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23215 and RR42_RS23220 are separated by 129 nucleotides RR42_RS23220 and RR42_RS23225 are separated by 222 nucleotides RR42_RS23225 and RR42_RS23230 are separated by 215 nucleotides
RR42_RS23215: RR42_RS23215 - DSBA oxidoreductase, at 540,303 to 541,841
_RS23215
RR42_RS23220: RR42_RS23220 - MarR family transcriptional regulator, at 541,971 to 542,414
_RS23220
RR42_RS23225: RR42_RS23225 - hypothetical protein, at 542,637 to 542,948
_RS23225
RR42_RS23230: RR42_RS23230 - glycerate kinase, at 543,164 to 544,354
_RS23230
Position (kb) 541
542
543 Strain fitness (log2 ratio) -1
0
1 at 540.976 kb on + strand, within RR42_RS23215 at 540.976 kb on + strand, within RR42_RS23215 at 540.977 kb on - strand, within RR42_RS23215 at 541.001 kb on + strand, within RR42_RS23215 at 541.001 kb on + strand, within RR42_RS23215 at 541.207 kb on - strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.337 kb on - strand, within RR42_RS23215 at 541.337 kb on - strand, within RR42_RS23215 at 541.341 kb on - strand, within RR42_RS23215 at 541.341 kb on - strand, within RR42_RS23215 at 541.443 kb on - strand, within RR42_RS23215 at 541.657 kb on + strand, within RR42_RS23215 at 541.657 kb on + strand, within RR42_RS23215 at 541.657 kb on + strand, within RR42_RS23215 at 541.657 kb on + strand, within RR42_RS23215 at 541.657 kb on + strand, within RR42_RS23215 at 541.657 kb on + strand, within RR42_RS23215 at 541.658 kb on - strand, within RR42_RS23215 at 541.658 kb on - strand, within RR42_RS23215 at 541.876 kb on + strand at 541.959 kb on + strand at 542.101 kb on - strand, within RR42_RS23220 at 542.112 kb on + strand, within RR42_RS23220 at 542.113 kb on - strand, within RR42_RS23220 at 542.113 kb on - strand, within RR42_RS23220 at 542.704 kb on + strand, within RR42_RS23225 at 542.704 kb on + strand, within RR42_RS23225 at 542.704 kb on + strand, within RR42_RS23225 at 542.705 kb on - strand, within RR42_RS23225 at 542.705 kb on - strand, within RR42_RS23225 at 542.705 kb on - strand, within RR42_RS23225 at 542.705 kb on - strand, within RR42_RS23225 at 542.705 kb on - strand, within RR42_RS23225 at 542.713 kb on + strand, within RR42_RS23225 at 542.763 kb on - strand, within RR42_RS23225 at 543.022 kb on + strand at 543.037 kb on + strand at 543.038 kb on - strand at 543.089 kb on + strand at 543.097 kb on + strand at 543.097 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 540,976 + RR42_RS23215 0.44 -0.7 540,976 + RR42_RS23215 0.44 -0.3 540,977 - RR42_RS23215 0.44 +0.4 541,001 + RR42_RS23215 0.45 +0.6 541,001 + RR42_RS23215 0.45 -0.3 541,207 - RR42_RS23215 0.59 -0.4 541,336 + RR42_RS23215 0.67 -0.4 541,336 + RR42_RS23215 0.67 +1.4 541,336 + RR42_RS23215 0.67 +0.7 541,336 + RR42_RS23215 0.67 -0.4 541,336 + RR42_RS23215 0.67 +0.2 541,336 + RR42_RS23215 0.67 -0.0 541,336 + RR42_RS23215 0.67 -1.5 541,337 - RR42_RS23215 0.67 -0.4 541,337 - RR42_RS23215 0.67 +0.1 541,341 - RR42_RS23215 0.67 -1.1 541,341 - RR42_RS23215 0.67 -0.0 541,443 - RR42_RS23215 0.74 -0.0 541,657 + RR42_RS23215 0.88 +0.1 541,657 + RR42_RS23215 0.88 -1.4 541,657 + RR42_RS23215 0.88 -0.3 541,657 + RR42_RS23215 0.88 -0.3 541,657 + RR42_RS23215 0.88 +0.6 541,657 + RR42_RS23215 0.88 -0.3 541,658 - RR42_RS23215 0.88 +0.1 541,658 - RR42_RS23215 0.88 -0.3 541,876 + +1.3 541,959 + -1.0 542,101 - RR42_RS23220 0.29 -1.2 542,112 + RR42_RS23220 0.32 -1.2 542,113 - RR42_RS23220 0.32 -0.5 542,113 - RR42_RS23220 0.32 -0.3 542,704 + RR42_RS23225 0.21 -0.1 542,704 + RR42_RS23225 0.21 -1.2 542,704 + RR42_RS23225 0.21 +1.5 542,705 - RR42_RS23225 0.22 +1.5 542,705 - RR42_RS23225 0.22 -0.8 542,705 - RR42_RS23225 0.22 +0.1 542,705 - RR42_RS23225 0.22 +0.1 542,705 - RR42_RS23225 0.22 -0.2 542,713 + RR42_RS23225 0.24 +0.5 542,763 - RR42_RS23225 0.40 +0.4 543,022 + -1.0 543,037 + +0.7 543,038 - -1.2 543,089 + -0.5 543,097 + -0.2 543,097 + +0.1
Or see this region's nucleotide sequence