Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22945 and RR42_RS22950 are separated by 177 nucleotides RR42_RS22950 and RR42_RS22955 are separated by 126 nucleotides
RR42_RS22945: RR42_RS22945 - oxidoreductase, at 481,486 to 482,514
_RS22945
RR42_RS22950: RR42_RS22950 - cytochrome C550, at 482,692 to 483,549
_RS22950
RR42_RS22955: RR42_RS22955 - isocitrate dehydrogenase, at 483,676 to 484,707
_RS22955
Position (kb) 482
483
484 Strain fitness (log2 ratio) -1
0
1
2 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.736 kb on - strand, within RR42_RS22945 at 481.810 kb on + strand, within RR42_RS22945 at 481.811 kb on - strand, within RR42_RS22945 at 481.924 kb on + strand, within RR42_RS22945 at 481.924 kb on + strand, within RR42_RS22945 at 481.924 kb on + strand, within RR42_RS22945 at 481.924 kb on + strand, within RR42_RS22945 at 481.925 kb on - strand, within RR42_RS22945 at 481.927 kb on + strand, within RR42_RS22945 at 481.928 kb on - strand, within RR42_RS22945 at 482.205 kb on + strand, within RR42_RS22945 at 482.205 kb on + strand, within RR42_RS22945 at 482.205 kb on + strand, within RR42_RS22945 at 482.206 kb on - strand, within RR42_RS22945 at 482.206 kb on - strand, within RR42_RS22945 at 482.317 kb on + strand, within RR42_RS22945 at 482.400 kb on + strand, within RR42_RS22945 at 482.400 kb on + strand, within RR42_RS22945 at 482.400 kb on + strand, within RR42_RS22945 at 482.426 kb on + strand at 482.427 kb on - strand at 482.591 kb on + strand at 482.592 kb on - strand at 482.646 kb on + strand at 482.647 kb on - strand at 482.679 kb on + strand at 482.680 kb on - strand at 482.710 kb on + strand at 482.772 kb on + strand at 482.773 kb on - strand at 482.773 kb on - strand at 482.791 kb on + strand, within RR42_RS22950 at 482.792 kb on - strand, within RR42_RS22950 at 482.792 kb on - strand, within RR42_RS22950 at 482.792 kb on - strand, within RR42_RS22950 at 482.809 kb on + strand, within RR42_RS22950 at 482.809 kb on + strand, within RR42_RS22950 at 482.809 kb on + strand, within RR42_RS22950 at 482.962 kb on + strand, within RR42_RS22950 at 482.962 kb on + strand, within RR42_RS22950 at 482.962 kb on + strand, within RR42_RS22950 at 482.962 kb on + strand, within RR42_RS22950 at 482.963 kb on - strand, within RR42_RS22950 at 482.963 kb on - strand, within RR42_RS22950 at 483.352 kb on - strand, within RR42_RS22950 at 483.352 kb on - strand, within RR42_RS22950 at 483.977 kb on + strand, within RR42_RS22955 at 483.977 kb on + strand, within RR42_RS22955 at 483.977 kb on + strand, within RR42_RS22955 at 484.017 kb on + strand, within RR42_RS22955 at 484.057 kb on + strand, within RR42_RS22955 at 484.058 kb on - strand, within RR42_RS22955 at 484.073 kb on - strand, within RR42_RS22955 at 484.073 kb on - strand, within RR42_RS22955 at 484.075 kb on + strand, within RR42_RS22955 at 484.076 kb on - strand, within RR42_RS22955 at 484.128 kb on + strand, within RR42_RS22955 at 484.171 kb on + strand, within RR42_RS22955 at 484.171 kb on + strand, within RR42_RS22955 at 484.280 kb on - strand, within RR42_RS22955 at 484.371 kb on + strand, within RR42_RS22955
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 481,735 + RR42_RS22945 0.24 +0.4 481,735 + RR42_RS22945 0.24 +2.0 481,735 + RR42_RS22945 0.24 -1.5 481,735 + RR42_RS22945 0.24 +0.2 481,735 + RR42_RS22945 0.24 +0.0 481,735 + RR42_RS22945 0.24 +0.0 481,736 - RR42_RS22945 0.24 +0.2 481,810 + RR42_RS22945 0.31 +0.7 481,811 - RR42_RS22945 0.32 +0.4 481,924 + RR42_RS22945 0.43 -0.0 481,924 + RR42_RS22945 0.43 +1.3 481,924 + RR42_RS22945 0.43 -0.5 481,924 + RR42_RS22945 0.43 +0.3 481,925 - RR42_RS22945 0.43 +0.5 481,927 + RR42_RS22945 0.43 +1.5 481,928 - RR42_RS22945 0.43 -0.2 482,205 + RR42_RS22945 0.70 +0.5 482,205 + RR42_RS22945 0.70 +0.3 482,205 + RR42_RS22945 0.70 +1.1 482,206 - RR42_RS22945 0.70 -0.6 482,206 - RR42_RS22945 0.70 +0.7 482,317 + RR42_RS22945 0.81 +0.7 482,400 + RR42_RS22945 0.89 +0.9 482,400 + RR42_RS22945 0.89 +0.1 482,400 + RR42_RS22945 0.89 -0.0 482,426 + -0.3 482,427 - +0.3 482,591 + +0.1 482,592 - -0.3 482,646 + +0.4 482,647 - +0.5 482,679 + +0.1 482,680 - +1.0 482,710 + +1.0 482,772 + +1.5 482,773 - +1.1 482,773 - +1.4 482,791 + RR42_RS22950 0.12 -0.3 482,792 - RR42_RS22950 0.12 +0.5 482,792 - RR42_RS22950 0.12 +0.0 482,792 - RR42_RS22950 0.12 -1.6 482,809 + RR42_RS22950 0.14 -0.5 482,809 + RR42_RS22950 0.14 +1.8 482,809 + RR42_RS22950 0.14 +1.3 482,962 + RR42_RS22950 0.31 +1.1 482,962 + RR42_RS22950 0.31 +1.2 482,962 + RR42_RS22950 0.31 +0.8 482,962 + RR42_RS22950 0.31 +0.1 482,963 - RR42_RS22950 0.32 +1.7 482,963 - RR42_RS22950 0.32 -0.1 483,352 - RR42_RS22950 0.77 +0.6 483,352 - RR42_RS22950 0.77 +1.8 483,977 + RR42_RS22955 0.29 -1.7 483,977 + RR42_RS22955 0.29 +0.4 483,977 + RR42_RS22955 0.29 -1.2 484,017 + RR42_RS22955 0.33 +0.6 484,057 + RR42_RS22955 0.37 -1.0 484,058 - RR42_RS22955 0.37 -1.2 484,073 - RR42_RS22955 0.38 +0.0 484,073 - RR42_RS22955 0.38 +0.2 484,075 + RR42_RS22955 0.39 -0.7 484,076 - RR42_RS22955 0.39 -0.1 484,128 + RR42_RS22955 0.44 -0.2 484,171 + RR42_RS22955 0.48 -0.4 484,171 + RR42_RS22955 0.48 +0.9 484,280 - RR42_RS22955 0.59 +0.7 484,371 + RR42_RS22955 0.67 -0.5
Or see this region's nucleotide sequence