Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22740 and RR42_RS22745 are separated by 294 nucleotides RR42_RS22745 and RR42_RS22750 are separated by 100 nucleotides RR42_RS22750 and RR42_RS22755 are separated by 67 nucleotides
RR42_RS22740: RR42_RS22740 - oxidoreductase, at 435,700 to 436,494
_RS22740
RR42_RS22745: RR42_RS22745 - phosphoribosylglycinamide formyltransferase, at 436,789 to 437,949
_RS22745
RR42_RS22750: RR42_RS22750 - aspartate racemase, at 438,050 to 438,748
_RS22750
RR42_RS22755: RR42_RS22755 - hypothetical protein, at 438,816 to 439,196
_RS22755
Position (kb) 436
437
438 Strain fitness (log2 ratio) -2
-1
0
1
2 at 436.034 kb on + strand, within RR42_RS22740 at 436.035 kb on - strand, within RR42_RS22740 at 436.035 kb on - strand, within RR42_RS22740 at 436.057 kb on - strand, within RR42_RS22740 at 436.101 kb on + strand, within RR42_RS22740 at 436.124 kb on + strand, within RR42_RS22740 at 436.124 kb on + strand, within RR42_RS22740 at 436.124 kb on + strand, within RR42_RS22740 at 436.125 kb on - strand, within RR42_RS22740 at 436.234 kb on + strand, within RR42_RS22740 at 436.537 kb on + strand at 436.537 kb on + strand at 436.538 kb on - strand at 436.538 kb on - strand at 436.635 kb on + strand at 436.635 kb on + strand at 436.635 kb on + strand at 436.636 kb on - strand at 436.707 kb on + strand at 436.707 kb on + strand at 436.708 kb on - strand at 436.708 kb on - strand at 436.722 kb on + strand at 436.723 kb on - strand at 437.140 kb on + strand, within RR42_RS22745 at 437.287 kb on + strand, within RR42_RS22745 at 437.288 kb on - strand, within RR42_RS22745 at 437.353 kb on + strand, within RR42_RS22745 at 437.740 kb on + strand, within RR42_RS22745 at 437.740 kb on + strand, within RR42_RS22745 at 437.740 kb on + strand, within RR42_RS22745 at 437.740 kb on + strand, within RR42_RS22745 at 437.741 kb on - strand, within RR42_RS22745 at 437.959 kb on - strand at 437.969 kb on - strand at 438.061 kb on + strand at 438.062 kb on - strand at 438.062 kb on - strand at 438.163 kb on - strand, within RR42_RS22750 at 438.191 kb on + strand, within RR42_RS22750 at 438.228 kb on + strand, within RR42_RS22750 at 438.228 kb on + strand, within RR42_RS22750 at 438.228 kb on + strand, within RR42_RS22750 at 438.323 kb on + strand, within RR42_RS22750 at 438.323 kb on + strand, within RR42_RS22750 at 438.323 kb on + strand, within RR42_RS22750 at 438.323 kb on + strand, within RR42_RS22750 at 438.324 kb on - strand, within RR42_RS22750 at 438.358 kb on + strand, within RR42_RS22750 at 438.359 kb on - strand, within RR42_RS22750 at 438.668 kb on - strand, within RR42_RS22750 at 438.744 kb on - strand at 438.776 kb on + strand at 438.776 kb on + strand at 438.776 kb on + strand at 438.776 kb on + strand at 438.776 kb on + strand at 438.776 kb on + strand at 438.777 kb on - strand at 438.779 kb on + strand at 438.779 kb on + strand at 438.779 kb on + strand at 438.780 kb on - strand at 438.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 436,034 + RR42_RS22740 0.42 +0.1 436,035 - RR42_RS22740 0.42 +0.1 436,035 - RR42_RS22740 0.42 -0.3 436,057 - RR42_RS22740 0.45 -0.0 436,101 + RR42_RS22740 0.50 +0.1 436,124 + RR42_RS22740 0.53 +1.2 436,124 + RR42_RS22740 0.53 +0.1 436,124 + RR42_RS22740 0.53 +1.1 436,125 - RR42_RS22740 0.53 +1.3 436,234 + RR42_RS22740 0.67 -0.0 436,537 + -0.3 436,537 + +0.6 436,538 - -0.2 436,538 - -0.1 436,635 + +0.3 436,635 + +2.1 436,635 + +0.1 436,636 - -0.5 436,707 + -0.7 436,707 + +1.1 436,708 - -0.8 436,708 - +1.1 436,722 + -0.2 436,723 - +0.2 437,140 + RR42_RS22745 0.30 -1.8 437,287 + RR42_RS22745 0.43 -0.2 437,288 - RR42_RS22745 0.43 -0.5 437,353 + RR42_RS22745 0.49 -1.4 437,740 + RR42_RS22745 0.82 -0.6 437,740 + RR42_RS22745 0.82 -0.3 437,740 + RR42_RS22745 0.82 +0.2 437,740 + RR42_RS22745 0.82 +1.1 437,741 - RR42_RS22745 0.82 -1.7 437,959 - +0.8 437,969 - +0.3 438,061 + -0.2 438,062 - +0.4 438,062 - -1.4 438,163 - RR42_RS22750 0.16 -1.1 438,191 + RR42_RS22750 0.20 +1.6 438,228 + RR42_RS22750 0.25 +0.5 438,228 + RR42_RS22750 0.25 -0.3 438,228 + RR42_RS22750 0.25 -1.7 438,323 + RR42_RS22750 0.39 -0.4 438,323 + RR42_RS22750 0.39 -0.1 438,323 + RR42_RS22750 0.39 +0.4 438,323 + RR42_RS22750 0.39 +0.8 438,324 - RR42_RS22750 0.39 -0.1 438,358 + RR42_RS22750 0.44 -0.1 438,359 - RR42_RS22750 0.44 -0.9 438,668 - RR42_RS22750 0.88 -0.4 438,744 - +0.1 438,776 + -0.2 438,776 + -0.1 438,776 + +0.4 438,776 + +1.4 438,776 + -0.2 438,776 + +0.3 438,777 - +0.4 438,779 + +0.3 438,779 + +0.4 438,779 + +0.2 438,780 - -0.3 438,780 - +0.6
Or see this region's nucleotide sequence