Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22730 and RR42_RS22735 are separated by 20 nucleotides RR42_RS22735 and RR42_RS22740 are separated by 121 nucleotides RR42_RS22740 and RR42_RS22745 are separated by 294 nucleotides
RR42_RS22730: RR42_RS22730 - pyridine nucleotide-disulfide oxidoreductase, at 433,813 to 435,018
_RS22730
RR42_RS22735: RR42_RS22735 - transcriptional regulator, at 435,039 to 435,578
_RS22735
RR42_RS22740: RR42_RS22740 - oxidoreductase, at 435,700 to 436,494
_RS22740
RR42_RS22745: RR42_RS22745 - phosphoribosylglycinamide formyltransferase, at 436,789 to 437,949
_RS22745
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1
2 at 434.719 kb on + strand, within RR42_RS22730 at 434.719 kb on + strand, within RR42_RS22730 at 434.719 kb on + strand, within RR42_RS22730 at 434.720 kb on - strand, within RR42_RS22730 at 434.720 kb on - strand, within RR42_RS22730 at 435.011 kb on + strand at 435.016 kb on + strand at 435.105 kb on + strand, within RR42_RS22735 at 435.105 kb on + strand, within RR42_RS22735 at 435.106 kb on - strand, within RR42_RS22735 at 435.106 kb on - strand, within RR42_RS22735 at 435.452 kb on - strand, within RR42_RS22735 at 435.495 kb on - strand, within RR42_RS22735 at 435.605 kb on - strand at 435.615 kb on - strand at 435.617 kb on - strand at 435.712 kb on - strand at 435.780 kb on - strand, within RR42_RS22740 at 435.780 kb on - strand, within RR42_RS22740 at 436.034 kb on + strand, within RR42_RS22740 at 436.035 kb on - strand, within RR42_RS22740 at 436.035 kb on - strand, within RR42_RS22740 at 436.057 kb on - strand, within RR42_RS22740 at 436.101 kb on + strand, within RR42_RS22740 at 436.124 kb on + strand, within RR42_RS22740 at 436.124 kb on + strand, within RR42_RS22740 at 436.124 kb on + strand, within RR42_RS22740 at 436.125 kb on - strand, within RR42_RS22740 at 436.234 kb on + strand, within RR42_RS22740 at 436.537 kb on + strand at 436.537 kb on + strand at 436.538 kb on - strand at 436.538 kb on - strand at 436.635 kb on + strand at 436.635 kb on + strand at 436.635 kb on + strand at 436.636 kb on - strand at 436.707 kb on + strand at 436.707 kb on + strand at 436.708 kb on - strand at 436.708 kb on - strand at 436.722 kb on + strand at 436.723 kb on - strand at 437.140 kb on + strand, within RR42_RS22745 at 437.287 kb on + strand, within RR42_RS22745 at 437.288 kb on - strand, within RR42_RS22745 at 437.353 kb on + strand, within RR42_RS22745
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 434,719 + RR42_RS22730 0.75 +0.0 434,719 + RR42_RS22730 0.75 -0.0 434,719 + RR42_RS22730 0.75 +0.1 434,720 - RR42_RS22730 0.75 +0.3 434,720 - RR42_RS22730 0.75 +0.1 435,011 + -0.7 435,016 + -0.6 435,105 + RR42_RS22735 0.12 -0.1 435,105 + RR42_RS22735 0.12 -1.5 435,106 - RR42_RS22735 0.12 -0.7 435,106 - RR42_RS22735 0.12 +0.8 435,452 - RR42_RS22735 0.76 -0.7 435,495 - RR42_RS22735 0.84 +0.2 435,605 - -1.2 435,615 - -0.8 435,617 - +1.0 435,712 - +0.3 435,780 - RR42_RS22740 0.10 +0.0 435,780 - RR42_RS22740 0.10 +0.3 436,034 + RR42_RS22740 0.42 +0.1 436,035 - RR42_RS22740 0.42 +0.1 436,035 - RR42_RS22740 0.42 -0.3 436,057 - RR42_RS22740 0.45 -0.0 436,101 + RR42_RS22740 0.50 +0.1 436,124 + RR42_RS22740 0.53 +1.2 436,124 + RR42_RS22740 0.53 +0.1 436,124 + RR42_RS22740 0.53 +1.1 436,125 - RR42_RS22740 0.53 +1.3 436,234 + RR42_RS22740 0.67 -0.0 436,537 + -0.3 436,537 + +0.6 436,538 - -0.2 436,538 - -0.1 436,635 + +0.3 436,635 + +2.1 436,635 + +0.1 436,636 - -0.5 436,707 + -0.7 436,707 + +1.1 436,708 - -0.8 436,708 - +1.1 436,722 + -0.2 436,723 - +0.2 437,140 + RR42_RS22745 0.30 -1.8 437,287 + RR42_RS22745 0.43 -0.2 437,288 - RR42_RS22745 0.43 -0.5 437,353 + RR42_RS22745 0.49 -1.4
Or see this region's nucleotide sequence