Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22310 and RR42_RS22315 are separated by 202 nucleotides RR42_RS22315 and RR42_RS22320 are separated by 35 nucleotides
RR42_RS22310: RR42_RS22310 - LysR family transcriptional regulator, at 346,289 to 347,188
_RS22310
RR42_RS22315: RR42_RS22315 - LysR family transcriptional regulator, at 347,391 to 347,831
_RS22315
RR42_RS22320: RR42_RS22320 - MFS transporter, at 347,867 to 349,171
_RS22320
Position (kb) 347
348 Strain fitness (log2 ratio) -2
-1
0
1
2 at 346.463 kb on - strand, within RR42_RS22310 at 346.528 kb on + strand, within RR42_RS22310 at 346.528 kb on + strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 347.069 kb on - strand, within RR42_RS22310 at 347.069 kb on - strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.200 kb on + strand at 347.219 kb on + strand at 347.219 kb on + strand at 347.254 kb on - strand at 347.259 kb on + strand at 347.545 kb on - strand, within RR42_RS22315 at 347.653 kb on + strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.675 kb on + strand, within RR42_RS22315 at 347.784 kb on + strand, within RR42_RS22315 at 347.785 kb on - strand, within RR42_RS22315 at 347.922 kb on + strand at 347.922 kb on + strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 348.354 kb on + strand, within RR42_RS22320 at 348.354 kb on + strand, within RR42_RS22320 at 348.354 kb on + strand, within RR42_RS22320 at 348.355 kb on - strand, within RR42_RS22320 at 348.355 kb on - strand, within RR42_RS22320 at 348.355 kb on - strand, within RR42_RS22320 at 348.685 kb on - strand, within RR42_RS22320 at 348.732 kb on + strand, within RR42_RS22320 at 348.750 kb on + strand, within RR42_RS22320 at 348.750 kb on + strand, within RR42_RS22320 at 348.750 kb on + strand, within RR42_RS22320 at 348.751 kb on - strand, within RR42_RS22320 at 348.808 kb on - strand, within RR42_RS22320 at 348.808 kb on - strand, within RR42_RS22320
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 346,463 - RR42_RS22310 0.19 -0.0 346,528 + RR42_RS22310 0.27 -0.0 346,528 + RR42_RS22310 0.27 +0.3 346,529 - RR42_RS22310 0.27 -0.9 346,529 - RR42_RS22310 0.27 -0.1 346,529 - RR42_RS22310 0.27 +0.5 347,069 - RR42_RS22310 0.87 +0.9 347,069 - RR42_RS22310 0.87 +2.4 347,070 + RR42_RS22310 0.87 +0.3 347,070 + RR42_RS22310 0.87 -1.2 347,071 - RR42_RS22310 0.87 -0.9 347,071 - RR42_RS22310 0.87 +0.2 347,200 + -1.4 347,219 + -0.3 347,219 + -0.0 347,254 - -0.4 347,259 + -0.8 347,545 - RR42_RS22315 0.35 +0.4 347,653 + RR42_RS22315 0.59 -0.8 347,654 - RR42_RS22315 0.60 -2.2 347,654 - RR42_RS22315 0.60 -0.4 347,654 - RR42_RS22315 0.60 -2.2 347,654 - RR42_RS22315 0.60 -0.4 347,675 + RR42_RS22315 0.64 +0.4 347,784 + RR42_RS22315 0.89 -1.5 347,785 - RR42_RS22315 0.89 -1.1 347,922 + +0.2 347,922 + -0.2 347,923 - -1.9 347,923 - -0.2 347,923 - -1.0 347,923 - -0.2 347,923 - -0.5 348,354 + RR42_RS22320 0.37 +0.1 348,354 + RR42_RS22320 0.37 +0.0 348,354 + RR42_RS22320 0.37 -0.0 348,355 - RR42_RS22320 0.37 -0.2 348,355 - RR42_RS22320 0.37 -0.9 348,355 - RR42_RS22320 0.37 +1.5 348,685 - RR42_RS22320 0.63 +0.8 348,732 + RR42_RS22320 0.66 -1.3 348,750 + RR42_RS22320 0.68 +0.1 348,750 + RR42_RS22320 0.68 -0.2 348,750 + RR42_RS22320 0.68 +0.6 348,751 - RR42_RS22320 0.68 -0.0 348,808 - RR42_RS22320 0.72 -0.3 348,808 - RR42_RS22320 0.72 -2.0
Or see this region's nucleotide sequence