Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21960 and RR42_RS21965 are separated by 126 nucleotides RR42_RS21965 and RR42_RS21970 are separated by 923 nucleotides
RR42_RS21960: RR42_RS21960 - cysteine synthase, at 252,293 to 253,210
_RS21960
RR42_RS21965: RR42_RS21965 - hypothetical protein, at 253,337 to 254,548
_RS21965
RR42_RS21970: RR42_RS21970 - hypothetical protein, at 255,472 to 258,339
_RS21970
Position (kb) 253
254
255 Strain fitness (log2 ratio) -2
-1
0
1
2 at 252.549 kb on - strand, within RR42_RS21960 at 252.618 kb on + strand, within RR42_RS21960 at 252.619 kb on - strand, within RR42_RS21960 at 252.670 kb on + strand, within RR42_RS21960 at 252.671 kb on - strand, within RR42_RS21960 at 252.671 kb on - strand, within RR42_RS21960 at 252.766 kb on + strand, within RR42_RS21960 at 252.891 kb on + strand, within RR42_RS21960 at 252.955 kb on - strand, within RR42_RS21960 at 252.955 kb on - strand, within RR42_RS21960 at 252.995 kb on - strand, within RR42_RS21960 at 253.174 kb on + strand at 253.175 kb on - strand at 253.215 kb on + strand at 253.215 kb on + strand at 253.318 kb on + strand at 253.318 kb on + strand at 253.318 kb on + strand at 253.318 kb on + strand at 253.319 kb on - strand at 253.319 kb on - strand at 253.319 kb on - strand at 253.339 kb on - strand at 253.339 kb on - strand at 253.339 kb on - strand at 253.437 kb on + strand at 253.438 kb on - strand at 253.438 kb on - strand at 253.438 kb on - strand at 253.622 kb on - strand, within RR42_RS21965 at 253.622 kb on - strand, within RR42_RS21965 at 253.748 kb on - strand, within RR42_RS21965 at 253.748 kb on - strand, within RR42_RS21965 at 253.759 kb on - strand, within RR42_RS21965 at 254.046 kb on + strand, within RR42_RS21965 at 254.047 kb on - strand, within RR42_RS21965 at 254.047 kb on - strand, within RR42_RS21965 at 254.181 kb on + strand, within RR42_RS21965 at 254.181 kb on + strand, within RR42_RS21965 at 254.616 kb on + strand at 254.617 kb on - strand at 254.623 kb on + strand at 254.623 kb on + strand at 254.624 kb on - strand at 254.630 kb on + strand at 254.631 kb on - strand at 254.754 kb on + strand at 254.831 kb on + strand at 254.949 kb on + strand at 254.950 kb on - strand at 254.950 kb on - strand at 254.950 kb on - strand at 254.950 kb on - strand at 254.950 kb on - strand at 254.957 kb on + strand at 254.957 kb on + strand at 254.957 kb on + strand at 254.958 kb on - strand at 254.958 kb on - strand at 255.135 kb on + strand at 255.135 kb on + strand at 255.135 kb on + strand at 255.135 kb on + strand at 255.135 kb on + strand at 255.136 kb on - strand at 255.136 kb on - strand at 255.149 kb on + strand at 255.156 kb on - strand at 255.156 kb on - strand at 255.163 kb on + strand at 255.163 kb on + strand at 255.164 kb on - strand at 255.164 kb on - strand at 255.164 kb on - strand at 255.165 kb on + strand at 255.165 kb on + strand at 255.210 kb on + strand at 255.210 kb on + strand at 255.211 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 252,549 - RR42_RS21960 0.28 -0.8 252,618 + RR42_RS21960 0.35 -0.7 252,619 - RR42_RS21960 0.36 +0.2 252,670 + RR42_RS21960 0.41 +0.2 252,671 - RR42_RS21960 0.41 -1.8 252,671 - RR42_RS21960 0.41 -0.4 252,766 + RR42_RS21960 0.52 -0.5 252,891 + RR42_RS21960 0.65 -0.2 252,955 - RR42_RS21960 0.72 -0.2 252,955 - RR42_RS21960 0.72 +1.1 252,995 - RR42_RS21960 0.76 +0.0 253,174 + +0.9 253,175 - +0.8 253,215 + -0.2 253,215 + -1.2 253,318 + -0.9 253,318 + -0.1 253,318 + +0.3 253,318 + -0.1 253,319 - +0.5 253,319 - -0.2 253,319 - +0.1 253,339 - -0.1 253,339 - -0.3 253,339 - +0.2 253,437 + +0.3 253,438 - -0.3 253,438 - -0.3 253,438 - +1.3 253,622 - RR42_RS21965 0.24 +0.2 253,622 - RR42_RS21965 0.24 +0.8 253,748 - RR42_RS21965 0.34 +0.4 253,748 - RR42_RS21965 0.34 +0.4 253,759 - RR42_RS21965 0.35 +0.4 254,046 + RR42_RS21965 0.58 -1.3 254,047 - RR42_RS21965 0.59 +0.6 254,047 - RR42_RS21965 0.59 -0.0 254,181 + RR42_RS21965 0.70 -0.1 254,181 + RR42_RS21965 0.70 +1.3 254,616 + -0.5 254,617 - +0.4 254,623 + +0.1 254,623 + +0.8 254,624 - +0.2 254,630 + -0.1 254,631 - -0.6 254,754 + -0.9 254,831 + -0.2 254,949 + +0.7 254,950 - -0.0 254,950 - +1.1 254,950 - +1.7 254,950 - +0.1 254,950 - -0.6 254,957 + -0.3 254,957 + -0.0 254,957 + -1.0 254,958 - +0.1 254,958 - -2.2 255,135 + -0.3 255,135 + +2.1 255,135 + -0.8 255,135 + +0.6 255,135 + -0.1 255,136 - -0.0 255,136 - -0.5 255,149 + -0.7 255,156 - +2.2 255,156 - -0.8 255,163 + -0.1 255,163 + -0.5 255,164 - -1.1 255,164 - -0.0 255,164 - -1.1 255,165 + -0.0 255,165 + +0.4 255,210 + -0.5 255,210 + -0.2 255,211 - -0.9
Or see this region's nucleotide sequence