Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20365 and RR42_RS20370 are separated by 156 nucleotides RR42_RS20370 and RR42_RS20375 are separated by 144 nucleotides RR42_RS20375 and RR42_RS20380 are separated by 25 nucleotides
RR42_RS20365: RR42_RS20365 - phenylalanine 4-monooxygenase (EC 1.14.16.1) <small>(from data)</small>, at 4,410,715 to 4,411,647
_RS20365
RR42_RS20370: RR42_RS20370 - pterin-4-alpha-carbinolamine dehydratase, at 4,411,804 to 4,412,121
_RS20370
RR42_RS20375: RR42_RS20375 - transcriptional regulator, at 4,412,266 to 4,412,970
_RS20375
RR42_RS20380: RR42_RS20380 - histidine kinase, at 4,412,996 to 4,414,615
_RS20380
Position (kb) 4412
4413 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4411.294 kb on + strand, within RR42_RS20365 at 4411.295 kb on - strand, within RR42_RS20365 at 4411.342 kb on + strand, within RR42_RS20365 at 4411.381 kb on + strand, within RR42_RS20365 at 4411.382 kb on - strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.475 kb on - strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.538 kb on - strand, within RR42_RS20365 at 4411.829 kb on + strand at 4411.915 kb on - strand, within RR42_RS20370 at 4412.008 kb on + strand, within RR42_RS20370 at 4412.159 kb on - strand at 4412.194 kb on + strand at 4412.271 kb on + strand at 4412.271 kb on + strand at 4412.557 kb on + strand, within RR42_RS20375 at 4412.558 kb on - strand, within RR42_RS20375 at 4412.606 kb on + strand, within RR42_RS20375 at 4412.607 kb on - strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.941 kb on + strand at 4413.191 kb on + strand, within RR42_RS20380 at 4413.192 kb on - strand, within RR42_RS20380 at 4413.192 kb on - strand, within RR42_RS20380 at 4413.209 kb on + strand at 4413.222 kb on + strand, within RR42_RS20380 at 4413.239 kb on + strand, within RR42_RS20380 at 4413.240 kb on - strand, within RR42_RS20380 at 4413.240 kb on - strand, within RR42_RS20380 at 4413.256 kb on + strand, within RR42_RS20380 at 4413.353 kb on + strand, within RR42_RS20380 at 4413.353 kb on + strand, within RR42_RS20380 at 4413.452 kb on + strand, within RR42_RS20380 at 4413.452 kb on + strand, within RR42_RS20380 at 4413.453 kb on - strand, within RR42_RS20380
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 4,411,294 + RR42_RS20365 0.62 -0.7 4,411,295 - RR42_RS20365 0.62 -0.0 4,411,342 + RR42_RS20365 0.67 -1.3 4,411,381 + RR42_RS20365 0.71 +0.4 4,411,382 - RR42_RS20365 0.71 -0.4 4,411,474 + RR42_RS20365 0.81 +0.2 4,411,474 + RR42_RS20365 0.81 -1.0 4,411,474 + RR42_RS20365 0.81 -1.2 4,411,474 + RR42_RS20365 0.81 -1.8 4,411,475 - RR42_RS20365 0.81 -0.1 4,411,537 + RR42_RS20365 0.88 -1.2 4,411,537 + RR42_RS20365 0.88 -1.0 4,411,537 + RR42_RS20365 0.88 -1.1 4,411,538 - RR42_RS20365 0.88 -0.7 4,411,829 + -0.9 4,411,915 - RR42_RS20370 0.35 -1.1 4,412,008 + RR42_RS20370 0.64 -1.0 4,412,159 - +0.2 4,412,194 + -0.1 4,412,271 + +0.8 4,412,271 + +0.3 4,412,557 + RR42_RS20375 0.41 +0.8 4,412,558 - RR42_RS20375 0.41 -0.4 4,412,606 + RR42_RS20375 0.48 +0.5 4,412,607 - RR42_RS20375 0.48 +0.8 4,412,872 + RR42_RS20375 0.86 +1.8 4,412,872 + RR42_RS20375 0.86 +0.9 4,412,872 + RR42_RS20375 0.86 +2.2 4,412,872 + RR42_RS20375 0.86 +0.8 4,412,941 + -0.1 4,413,191 + RR42_RS20380 0.12 +0.8 4,413,192 - RR42_RS20380 0.12 +1.2 4,413,192 - RR42_RS20380 0.12 +0.2 4,413,209 + +3.2 4,413,222 + RR42_RS20380 0.14 +0.0 4,413,239 + RR42_RS20380 0.15 +0.6 4,413,240 - RR42_RS20380 0.15 +1.2 4,413,240 - RR42_RS20380 0.15 +1.7 4,413,256 + RR42_RS20380 0.16 +0.6 4,413,353 + RR42_RS20380 0.22 -0.0 4,413,353 + RR42_RS20380 0.22 +1.0 4,413,452 + RR42_RS20380 0.28 +0.3 4,413,452 + RR42_RS20380 0.28 -1.1 4,413,453 - RR42_RS20380 0.28 +0.3
Or see this region's nucleotide sequence