Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19110 and RR42_RS19115 are separated by 117 nucleotides RR42_RS19115 and RR42_RS19120 are separated by 159 nucleotides RR42_RS19120 and RR42_RS19125 are separated by 161 nucleotides
RR42_RS19110: RR42_RS19110 - thiol:disulfide interchange protein, at 4,141,210 to 4,143,153
_RS19110
RR42_RS19115: RR42_RS19115 - cation tolerance protein CutA, at 4,143,271 to 4,143,615
_RS19115
RR42_RS19120: RR42_RS19120 - 50S ribosomal protein L17, at 4,143,775 to 4,144,170
_RS19120
RR42_RS19125: RR42_RS19125 - DNA-directed RNA polymerase subunit alpha, at 4,144,332 to 4,145,312
_RS19125
Position (kb)
4143
4144
4145 Strain fitness (log2 ratio)
-1
0
1
2 at 4143.182 kb on - strand at 4143.230 kb on - strand at 4143.230 kb on - strand at 4143.230 kb on - strand at 4143.267 kb on - strand at 4143.273 kb on - strand at 4143.381 kb on - strand, within RR42_RS19115 at 4143.419 kb on + strand, within RR42_RS19115 at 4143.420 kb on - strand, within RR42_RS19115 at 4143.489 kb on - strand, within RR42_RS19115 at 4143.489 kb on - strand, within RR42_RS19115 at 4143.697 kb on + strand at 4143.697 kb on + strand at 4143.698 kb on - strand at 4143.698 kb on - strand at 4143.698 kb on - strand at 4143.713 kb on + strand at 4143.714 kb on - strand at 4143.714 kb on - strand at 4143.714 kb on - strand at 4144.334 kb on - strand at 4144.334 kb on - strand at 4144.334 kb on - strand at 4144.334 kb on - strand at 4144.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 4,143,182 - +0.5 4,143,230 - +0.2 4,143,230 - +0.4 4,143,230 - +0.0 4,143,267 - -0.5 4,143,273 - -1.4 4,143,381 - RR42_RS19115 0.32 -0.2 4,143,419 + RR42_RS19115 0.43 +2.1 4,143,420 - RR42_RS19115 0.43 +0.0 4,143,489 - RR42_RS19115 0.63 +0.6 4,143,489 - RR42_RS19115 0.63 -0.3 4,143,697 + +1.9 4,143,697 + -0.1 4,143,698 - -0.8 4,143,698 - +0.2 4,143,698 - +0.9 4,143,713 + -0.6 4,143,714 - -0.7 4,143,714 - +0.2 4,143,714 - -0.3 4,144,334 - -0.5 4,144,334 - -0.7 4,144,334 - +0.6 4,144,334 - -1.7 4,144,334 - -1.6
Or see this region's nucleotide sequence