Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17440

Experiment: R2A with Chlorite 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chlorite 4 mM
3,775,512	+		RR42_RS17435	0.65	-0.9
3,775,512	+		RR42_RS17435	0.65	-0.2
3,775,513	-		RR42_RS17435	0.65	-1.9
3,775,633	-		RR42_RS17435	0.74	+0.9
3,775,646	-		RR42_RS17435	0.75	+1.2
3,775,813	-		RR42_RS17435	0.87	+0.6
3,775,879	-				-0.4
3,775,887	+				+0.5
3,775,924	+				-0.3
3,775,924	+				-0.8
3,775,924	+				+0.3
3,775,925	-				-0.6
3,775,967	-				+0.4
3,775,995	+				+1.2
3,775,995	+				-0.7
3,775,995	+				-0.2
3,775,996	-				+0.4
3,775,996	-				-0.9
3,776,002	+				+0.7
3,776,081	+				+0.9
3,776,097	+				-0.1
3,776,102	+				-0.8
3,776,110	+				-0.9
3,776,110	+				-0.1
3,776,111	-				-0.1
3,776,120	+				-0.0
3,776,120	+				-0.3
3,776,131	+				+0.2
3,776,131	+				+0.5
3,776,131	+				+0.2
3,776,131	+				-0.4
3,776,131	+				-1.4
3,776,131	+				-0.1
3,776,132	-				-2.1
3,776,132	-				-0.5
3,776,132	-				+0.2
3,776,188	-				+0.5
3,776,197	+				-0.5
3,776,197	+				-0.7
3,776,198	-				-1.1
3,776,233	+				-0.0
3,776,233	+				-0.3
3,776,241	+				+0.4
3,776,248	+				+1.1
3,776,256	+				-0.9
3,776,256	+				-0.1
3,776,257	-				+0.4
3,776,257	-				-0.1
3,776,280	+				-0.8
3,776,280	+				-1.4
3,776,280	+				+3.1
3,776,280	+				+0.7
3,776,280	+				-0.8
3,776,280	+				-0.1
3,776,280	+				-1.2
3,776,281	-				-0.0
3,776,281	-				-0.1
3,776,281	-				-0.8
3,776,307	+				+0.1
3,776,307	+				+1.5
3,776,308	-				+0.7
3,776,497	+				-0.2
3,776,508	+				-1.0
3,776,509	-				-0.8
3,776,566	+		RR42_RS17440	0.12	-0.8
3,776,567	-		RR42_RS17440	0.12	+0.8
3,776,761	+		RR42_RS17440	0.46	-0.2
3,776,761	+		RR42_RS17440	0.46	-0.3
3,776,761	+		RR42_RS17440	0.46	-0.4
3,776,761	+		RR42_RS17440	0.46	-0.1
3,776,761	+		RR42_RS17440	0.46	+0.3
3,776,761	+		RR42_RS17440	0.46	-0.4
3,776,761	+		RR42_RS17440	0.46	-0.5
3,776,761	+		RR42_RS17440	0.46	-1.4
3,776,761	+		RR42_RS17440	0.46	-0.5
3,776,762	-		RR42_RS17440	0.46	-1.9
3,776,762	-		RR42_RS17440	0.46	+0.5
3,776,762	-		RR42_RS17440	0.46	-0.8
3,777,001	+		RR42_RS17440	0.87	-0.1
3,777,001	+		RR42_RS17440	0.87	-0.9
3,777,002	-		RR42_RS17440	0.87	-0.1
3,777,147	-				-0.4
3,777,236	+		RR42_RS17445	0.16	-0.3
3,777,237	-		RR42_RS17445	0.16	-0.8
3,777,297	-		RR42_RS17445	0.27	-0.3
3,777,359	+		RR42_RS17445	0.37	-2.0
3,777,359	+		RR42_RS17445	0.37	-0.5
3,777,359	+		RR42_RS17445	0.37	+0.8
3,777,359	+		RR42_RS17445	0.37	-1.2
3,777,359	+		RR42_RS17445	0.37	-0.3
3,777,360	-		RR42_RS17445	0.38	+0.7
3,777,360	-		RR42_RS17445	0.38	-0.9
3,777,360	-		RR42_RS17445	0.38	+0.2
3,777,360	-		RR42_RS17445	0.38	-0.7
3,777,360	-		RR42_RS17445	0.38	-0.1
3,777,413	+		RR42_RS17445	0.47	+1.5
3,777,644	+		RR42_RS17445	0.87	-0.7
3,777,644	+		RR42_RS17445	0.87	-0.4
3,777,644	+		RR42_RS17445	0.87	+0.4
3,777,644	+		RR42_RS17445	0.87	+1.9
3,777,644	+		RR42_RS17445	0.87	-1.4
3,777,645	-		RR42_RS17445	0.87	+0.8
3,777,645	-		RR42_RS17445	0.87	-1.3
3,777,786	+				-1.6
3,777,787	-				+0.2
3,777,787	-				+0.5
3,777,787	-				-0.5
3,777,866	+		RR42_RS17450	0.14	+0.1
3,777,888	+		RR42_RS17450	0.17	-0.7
3,777,889	-		RR42_RS17450	0.18	+0.1
3,777,889	-		RR42_RS17450	0.18	-0.1
3,777,889	-		RR42_RS17450	0.18	+0.7
3,777,975	+		RR42_RS17450	0.32	+0.1
3,777,976	-		RR42_RS17450	0.32	+0.2
3,777,976	-				+2.1
3,778,003	+		RR42_RS17450	0.37	+0.2
3,778,003	+		RR42_RS17450	0.37	-0.1
3,778,004	-		RR42_RS17450	0.37	-1.3
3,778,004	-		RR42_RS17450	0.37	-1.6
3,778,004	-		RR42_RS17450	0.37	-0.7
3,778,005	+		RR42_RS17450	0.37	+0.3
3,778,005	+		RR42_RS17450	0.37	+0.7
3,778,005	+		RR42_RS17450	0.37	+0.9
3,778,005	+		RR42_RS17450	0.37	-0.5
3,778,044	+		RR42_RS17450	0.44	-0.5
3,778,044	+		RR42_RS17450	0.44	-1.1