Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14905
Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Chlorite 4 mM |
---|---|---|---|---|---|
remove | |||||
3,223,387 | + | -1.8 | |||
3,223,387 | + | +0.3 | |||
3,223,388 | - | +0.6 | |||
3,223,388 | - | +0.5 | |||
3,223,393 | + | -0.1 | |||
3,223,393 | + | +0.1 | |||
3,223,393 | + | +0.3 | |||
3,223,394 | - | +0.0 | |||
3,223,394 | - | +0.8 | |||
3,223,444 | + | -1.2 | |||
3,223,445 | - | +0.7 | |||
3,223,727 | + | RR42_RS14905 | 0.31 | +0.9 | |
3,223,728 | - | RR42_RS14905 | 0.31 | +0.6 | |
3,223,896 | - | RR42_RS14905 | 0.63 | -0.1 | |
3,224,122 | + | -0.4 | |||
3,224,123 | - | +0.5 | |||
3,224,284 | + | -0.1 | |||
3,224,284 | + | -0.2 | |||
3,224,284 | + | +0.1 | |||
3,224,710 | + | RR42_RS14910 | 0.54 | +0.2 | |
3,224,711 | - | RR42_RS14910 | 0.54 | -0.9 | |
3,224,711 | - | RR42_RS14910 | 0.54 | +0.8 | |
3,224,711 | - | RR42_RS14910 | 0.54 | -0.4 | |
3,224,832 | + | RR42_RS14910 | 0.67 | +0.5 | |
3,224,833 | - | RR42_RS14910 | 0.67 | +0.4 |
Or see this region's nucleotide sequence