Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11150

Experiment: R2A with Chlorite 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chlorite 4 mM
2,380,338	-		RR42_RS11145	0.25	-0.2
2,380,415	-		RR42_RS11145	0.33	+0.1
2,380,415	-		RR42_RS11145	0.33	+1.1
2,380,415	-		RR42_RS11145	0.33	+1.1
2,380,499	-		RR42_RS11145	0.42	+0.5
2,380,582	-		RR42_RS11145	0.51	-0.5
2,380,582	-		RR42_RS11145	0.51	+0.2
2,380,653	-		RR42_RS11145	0.58	+0.3
2,380,716	-		RR42_RS11145	0.65	-0.6
2,380,743	+		RR42_RS11145	0.68	+0.6
2,380,759	+		RR42_RS11145	0.70	+0.1
2,380,760	-		RR42_RS11145	0.70	+0.8
2,380,785	+		RR42_RS11145	0.72	-0.6
2,380,785	+		RR42_RS11145	0.72	-0.3
2,380,785	+		RR42_RS11145	0.72	+0.1
2,380,785	+		RR42_RS11145	0.72	+0.1
2,380,918	+		RR42_RS11145	0.86	+0.2
2,380,918	+		RR42_RS11145	0.86	-0.2
2,380,918	+		RR42_RS11145	0.86	+0.1
2,380,919	-				+0.6
2,380,920	+		RR42_RS11145	0.86	+0.1
2,380,920	+		RR42_RS11145	0.86	-0.1
2,380,920	+		RR42_RS11145	0.86	+1.5
2,380,920	+		RR42_RS11145	0.86	+0.1
2,380,921	-		RR42_RS11145	0.87	-0.7
2,380,921	-		RR42_RS11145	0.87	-0.0
2,381,008	-				+0.7
2,381,052	+				-0.9
2,381,052	+				-0.4
2,381,053	-				+0.6
2,381,174	-				-0.2
2,381,174	-				-1.7
2,381,174	-				+0.6
2,381,274	+				+0.0
2,381,523	+		RR42_RS11150	0.24	-0.2
2,381,524	-		RR42_RS11150	0.24	+0.1
2,381,524	-		RR42_RS11150	0.24	-2.3
2,381,524	-		RR42_RS11150	0.24	-0.7
2,381,524	-		RR42_RS11150	0.24	-0.2
2,381,578	+		RR42_RS11150	0.28	-0.1
2,381,613	+		RR42_RS11150	0.31	+0.5
2,381,613	+		RR42_RS11150	0.31	+0.2
2,381,613	+		RR42_RS11150	0.31	-0.2
2,381,614	-		RR42_RS11150	0.31	+0.8
2,381,617	-		RR42_RS11150	0.31	-0.0
2,381,625	+		RR42_RS11150	0.32	-0.6
2,381,625	+		RR42_RS11150	0.32	-0.1
2,381,625	+		RR42_RS11150	0.32	+0.8
2,381,625	+		RR42_RS11150	0.32	+0.6
2,381,626	-		RR42_RS11150	0.32	-0.8
2,381,626	-		RR42_RS11150	0.32	-0.6
2,381,626	-		RR42_RS11150	0.32	-0.9
2,381,626	-		RR42_RS11150	0.32	-1.6
2,381,685	+		RR42_RS11150	0.37	-1.5
2,381,688	+		RR42_RS11150	0.37	-0.2
2,381,688	+		RR42_RS11150	0.37	-1.0
2,381,688	+		RR42_RS11150	0.37	-0.8
2,381,689	-		RR42_RS11150	0.37	-0.7
2,381,689	-		RR42_RS11150	0.37	+0.0
2,381,695	-		RR42_RS11150	0.38	-0.0
2,381,695	-		RR42_RS11150	0.38	+0.9
2,381,695	-		RR42_RS11150	0.38	+0.0
2,381,697	+		RR42_RS11150	0.38	+0.8
2,381,698	-		RR42_RS11150	0.38	-0.4
2,381,698	-		RR42_RS11150	0.38	-0.6
2,381,698	-		RR42_RS11150	0.38	-0.5
2,381,698	-		RR42_RS11150	0.38	+0.4
2,381,929	-		RR42_RS11150	0.57	+0.1
2,381,946	+		RR42_RS11150	0.58	+0.4
2,381,979	+		RR42_RS11150	0.61	+0.6
2,381,980	-		RR42_RS11150	0.61	+0.1
2,381,980	-		RR42_RS11150	0.61	-1.5
2,382,078	+		RR42_RS11150	0.69	+0.1
2,382,087	+		RR42_RS11150	0.69	-0.3
2,382,374	-				+0.4
2,382,485	+				+0.3
2,382,486	-				-0.1
2,382,754	+				+0.4
2,382,755	-				-0.8
2,382,755	-				+0.8
2,382,839	-		RR42_RS11155	0.14	-2.5
2,382,839	-		RR42_RS11155	0.14	+0.6
2,382,839	-		RR42_RS11155	0.14	+0.3
2,382,839	-		RR42_RS11155	0.14	-0.6
2,382,861	-		RR42_RS11155	0.15	+0.0
2,382,861	-		RR42_RS11155	0.15	-1.1
2,382,964	+		RR42_RS11155	0.21	+1.2
2,382,964	+		RR42_RS11155	0.21	-0.2
2,382,965	-		RR42_RS11155	0.22	+0.1
2,382,965	-		RR42_RS11155	0.22	-0.1
2,383,042	+		RR42_RS11155	0.26	+1.3
2,383,147	+		RR42_RS11155	0.33	+0.3
2,383,147	+		RR42_RS11155	0.33	-0.2
2,383,148	-		RR42_RS11155	0.33	+0.6
2,383,148	-		RR42_RS11155	0.33	-0.6
2,383,148	-		RR42_RS11155	0.33	-1.0
2,383,148	-		RR42_RS11155	0.33	-0.5
2,383,377	+		RR42_RS11155	0.47	+0.6
2,383,377	+		RR42_RS11155	0.47	+0.3
2,383,377	+		RR42_RS11155	0.47	-1.4
2,383,401	+		RR42_RS11155	0.48	+0.6