Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08375 and RR42_RS08380 are separated by 29 nucleotides RR42_RS08380 and RR42_RS08385 are separated by 31 nucleotides RR42_RS08385 and RR42_RS08390 are separated by 3 nucleotides
RR42_RS08375: RR42_RS08375 - transposase, at 1,771,517 to 1,771,921
_RS08375
RR42_RS08380: RR42_RS08380 - hypothetical protein, at 1,771,951 to 1,772,760
_RS08380
RR42_RS08385: RR42_RS08385 - hypothetical protein, at 1,772,792 to 1,773,112
_RS08385
RR42_RS08390: RR42_RS08390 - hypothetical protein, at 1,773,116 to 1,773,805
_RS08390
Position (kb)
1772
1773
1774 Strain fitness (log2 ratio)
-2
-1
0
1 at 1772.791 kb on + strand at 1772.811 kb on + strand at 1773.056 kb on + strand, within RR42_RS08385 at 1773.056 kb on + strand, within RR42_RS08385 at 1773.056 kb on + strand, within RR42_RS08385 at 1773.057 kb on - strand, within RR42_RS08385 at 1773.057 kb on - strand, within RR42_RS08385 at 1773.110 kb on + strand at 1773.110 kb on + strand at 1773.110 kb on + strand at 1773.110 kb on + strand at 1773.111 kb on - strand at 1773.142 kb on - strand at 1773.520 kb on - strand, within RR42_RS08390 at 1773.572 kb on - strand at 1773.699 kb on + strand, within RR42_RS08390 at 1773.700 kb on - strand, within RR42_RS08390 at 1773.716 kb on + strand, within RR42_RS08390 at 1773.716 kb on + strand, within RR42_RS08390 at 1773.808 kb on - strand at 1773.886 kb on + strand at 1773.887 kb on - strand at 1774.017 kb on + strand at 1774.087 kb on - strand at 1774.087 kb on - strand at 1774.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 1,772,791 + +0.9 1,772,811 + -0.5 1,773,056 + RR42_RS08385 0.82 -1.0 1,773,056 + RR42_RS08385 0.82 -1.1 1,773,056 + RR42_RS08385 0.82 -0.8 1,773,057 - RR42_RS08385 0.83 -2.0 1,773,057 - RR42_RS08385 0.83 -0.4 1,773,110 + +0.3 1,773,110 + -0.9 1,773,110 + -0.0 1,773,110 + -0.3 1,773,111 - -0.9 1,773,142 - -0.9 1,773,520 - RR42_RS08390 0.59 -0.1 1,773,572 - +0.8 1,773,699 + RR42_RS08390 0.84 -0.6 1,773,700 - RR42_RS08390 0.85 +0.5 1,773,716 + RR42_RS08390 0.87 +0.5 1,773,716 + RR42_RS08390 0.87 -1.1 1,773,808 - +0.1 1,773,886 + -0.1 1,773,887 - -1.2 1,774,017 + +0.1 1,774,087 - +0.6 1,774,087 - +0.2 1,774,087 - +1.1
Or see this region's nucleotide sequence