Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07450

Experiment: R2A with Chlorite 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07440 and RR42_RS07445 are separated by 91 nucleotidesRR42_RS07445 and RR42_RS07450 are separated by 1 nucleotidesRR42_RS07450 and RR42_RS07455 are separated by 152 nucleotides RR42_RS07440: RR42_RS07440 - hypothetical protein, at 1,591,315 to 1,591,590 _RS07440 RR42_RS07445: RR42_RS07445 - ABC transporter ATP-binding protein, at 1,591,682 to 1,592,476 _RS07445 RR42_RS07450: RR42_RS07450 - ABC transporter permease, at 1,592,478 to 1,593,374 _RS07450 RR42_RS07455: RR42_RS07455 - ABC transporter substrate-binding protein, at 1,593,527 to 1,594,498 _RS07455 Position (kb) 1592 1593 1594Strain fitness (log2 ratio) -3 -2 -1 0 1at 1591.505 kb on + strand, within RR42_RS07440at 1591.519 kb on - strand, within RR42_RS07440at 1591.519 kb on - strand, within RR42_RS07440at 1592.100 kb on - strand, within RR42_RS07445at 1592.550 kb on + strandat 1592.665 kb on + strand, within RR42_RS07450at 1592.665 kb on + strand, within RR42_RS07450at 1592.665 kb on + strand, within RR42_RS07450at 1592.666 kb on - strand, within RR42_RS07450at 1592.666 kb on - strand, within RR42_RS07450at 1592.750 kb on + strand, within RR42_RS07450at 1592.796 kb on + strand, within RR42_RS07450at 1592.983 kb on + strand, within RR42_RS07450at 1592.984 kb on - strand, within RR42_RS07450at 1592.984 kb on - strand, within RR42_RS07450at 1592.984 kb on - strand, within RR42_RS07450at 1592.984 kb on - strand, within RR42_RS07450at 1593.079 kb on + strand, within RR42_RS07450at 1593.080 kb on - strand, within RR42_RS07450at 1593.080 kb on - strand, within RR42_RS07450at 1593.529 kb on - strandat 1593.529 kb on - strandat 1593.711 kb on + strand, within RR42_RS07455at 1593.712 kb on - strand, within RR42_RS07455at 1593.712 kb on - strand, within RR42_RS07455at 1593.712 kb on - strand, within RR42_RS07455at 1593.712 kb on - strand, within RR42_RS07455at 1593.712 kb on - strand, within RR42_RS07455at 1593.712 kb on - strand, within RR42_RS07455at 1593.712 kb on - strand, within RR42_RS07455at 1593.712 kb on - strand, within RR42_RS07455at 1593.757 kb on + strand, within RR42_RS07455at 1593.846 kb on + strand, within RR42_RS07455at 1593.846 kb on + strand, within RR42_RS07455at 1593.846 kb on + strand, within RR42_RS07455at 1593.944 kb on + strand, within RR42_RS07455at 1593.945 kb on - strand, within RR42_RS07455at 1593.945 kb on - strand, within RR42_RS07455at 1593.999 kb on + strand, within RR42_RS07455at 1593.999 kb on + strand, within RR42_RS07455at 1593.999 kb on + strand, within RR42_RS07455at 1593.999 kb on + strand, within RR42_RS07455at 1594.297 kb on - strand, within RR42_RS07455

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM
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1,591,505 + RR42_RS07440 0.69 +0.0
1,591,519 - RR42_RS07440 0.74 +0.8
1,591,519 - RR42_RS07440 0.74 +0.1
1,592,100 - RR42_RS07445 0.53 -1.4
1,592,550 + -1.9
1,592,665 + RR42_RS07450 0.21 -0.5
1,592,665 + RR42_RS07450 0.21 -1.3
1,592,665 + RR42_RS07450 0.21 -1.3
1,592,666 - RR42_RS07450 0.21 -1.0
1,592,666 - RR42_RS07450 0.21 -0.1
1,592,750 + RR42_RS07450 0.30 -0.4
1,592,796 + RR42_RS07450 0.35 -1.8
1,592,983 + RR42_RS07450 0.56 -1.0
1,592,984 - RR42_RS07450 0.56 -0.5
1,592,984 - RR42_RS07450 0.56 -1.1
1,592,984 - RR42_RS07450 0.56 -1.4
1,592,984 - RR42_RS07450 0.56 +0.2
1,593,079 + RR42_RS07450 0.67 -1.0
1,593,080 - RR42_RS07450 0.67 +1.4
1,593,080 - RR42_RS07450 0.67 -0.6
1,593,529 - +0.7
1,593,529 - -0.7
1,593,711 + RR42_RS07455 0.19 +0.2
1,593,712 - RR42_RS07455 0.19 -1.9
1,593,712 - RR42_RS07455 0.19 -1.4
1,593,712 - RR42_RS07455 0.19 -0.7
1,593,712 - RR42_RS07455 0.19 -0.5
1,593,712 - RR42_RS07455 0.19 -1.5
1,593,712 - RR42_RS07455 0.19 -0.5
1,593,712 - RR42_RS07455 0.19 -0.2
1,593,712 - RR42_RS07455 0.19 -2.1
1,593,757 + RR42_RS07455 0.24 -1.8
1,593,846 + RR42_RS07455 0.33 -1.3
1,593,846 + RR42_RS07455 0.33 +0.2
1,593,846 + RR42_RS07455 0.33 +1.1
1,593,944 + RR42_RS07455 0.43 +0.6
1,593,945 - RR42_RS07455 0.43 -0.7
1,593,945 - RR42_RS07455 0.43 -1.3
1,593,999 + RR42_RS07455 0.49 -0.8
1,593,999 + RR42_RS07455 0.49 -2.4
1,593,999 + RR42_RS07455 0.49 -1.4
1,593,999 + RR42_RS07455 0.49 -2.9
1,594,297 - RR42_RS07455 0.79 -1.1

Or see this region's nucleotide sequence