Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07420

Experiment: R2A with Chlorite 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chlorite 4 mM
1,586,331	+		RR42_RS07415	0.40	+0.0
1,586,331	+		RR42_RS07415	0.40	+0.6
1,586,332	-		RR42_RS07415	0.40	+2.4
1,586,332	-		RR42_RS07415	0.40	-0.8
1,586,332	-		RR42_RS07415	0.40	+0.5
1,586,505	-		RR42_RS07415	0.53	+0.3
1,586,505	-		RR42_RS07415	0.53	-1.0
1,586,551	+		RR42_RS07415	0.56	+0.5
1,586,999	+		RR42_RS07415	0.87	+0.6
1,587,000	-		RR42_RS07415	0.88	+0.4
1,587,164	+				-1.1
1,587,165	-				+0.4
1,587,456	+		RR42_RS07420	0.33	+0.7
1,587,456	+		RR42_RS07420	0.33	-0.4
1,587,457	-		RR42_RS07420	0.34	+1.1
1,587,474	+		RR42_RS07420	0.36	-0.4
1,587,475	-		RR42_RS07420	0.36	+0.4
1,587,477	+				+1.8
1,587,477	+		RR42_RS07420	0.36	-1.4
1,587,477	+		RR42_RS07420	0.36	+1.8
1,587,478	-		RR42_RS07420	0.36	+1.0
1,587,478	-		RR42_RS07420	0.36	+1.4
1,587,478	-		RR42_RS07420	0.36	+0.5
1,587,478	-		RR42_RS07420	0.36	-0.1
1,587,478	-		RR42_RS07420	0.36	+1.5
1,587,478	-		RR42_RS07420	0.36	-0.7
1,587,663	+		RR42_RS07420	0.61	-0.0
1,587,663	+		RR42_RS07420	0.61	+0.7
1,587,664	-		RR42_RS07420	0.61	+1.0
1,587,664	-		RR42_RS07420	0.61	+1.0
1,587,830	+		RR42_RS07420	0.84	-0.4
1,587,831	+		RR42_RS07420	0.84	+0.2
1,587,831	+		RR42_RS07420	0.84	+0.4
1,587,831	+		RR42_RS07420	0.84	-0.3
1,587,832	-		RR42_RS07420	0.84	+0.5
1,587,832	-		RR42_RS07420	0.84	+1.2
1,587,879	+				+0.5
1,587,879	+				-0.1
1,587,880	-				-0.9
1,587,917	+				+0.8
1,587,918	-				+0.1
1,587,966	+				+0.8
1,587,966	+				+1.0
1,587,997	-				+1.0
1,587,997	-				-0.6
1,587,997	-				+2.8
1,587,998	+				-0.4
1,588,000	+				+0.1
1,588,001	-				+0.3
1,588,005	-				+1.0
1,588,039	+				-0.3
1,588,062	+				+0.8
1,588,063	-				-0.3
1,588,138	+				+0.1
1,588,258	+		RR42_RS07425	0.18	+0.4
1,588,258	+		RR42_RS07425	0.18	-0.6
1,588,258	+		RR42_RS07425	0.18	-0.5
1,588,259	-		RR42_RS07425	0.18	-1.0
1,588,259	-		RR42_RS07425	0.18	+1.1
1,588,259	-		RR42_RS07425	0.18	+0.3
1,588,259	-		RR42_RS07425	0.18	+0.1
1,588,412	-		RR42_RS07425	0.38	-1.3
1,588,412	-		RR42_RS07425	0.38	-2.2
1,588,528	+		RR42_RS07425	0.52	-0.2
1,588,528	+		RR42_RS07425	0.52	-0.1
1,588,528	+		RR42_RS07425	0.52	-1.4
1,588,529	-		RR42_RS07425	0.53	+1.6
1,588,529	-		RR42_RS07425	0.53	+0.5
1,588,529	-		RR42_RS07425	0.53	+0.5
1,588,544	-		RR42_RS07425	0.54	+0.7