Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07345 and RR42_RS07350 are separated by 107 nucleotides RR42_RS07350 and RR42_RS07355 are separated by 72 nucleotides RR42_RS07355 and RR42_RS07360 are separated by 134 nucleotides
RR42_RS07345: RR42_RS07345 - methenyltetrahydrofolate cyclohydrolase, at 1,567,122 to 1,567,973
_RS07345
RR42_RS07350: RR42_RS07350 - hypothetical protein, at 1,568,081 to 1,568,764
_RS07350
RR42_RS07355: RR42_RS07355 - LuxR family transcriptional regulator, at 1,568,837 to 1,569,469
_RS07355
RR42_RS07360: RR42_RS07360 - ATPase, at 1,569,604 to 1,572,192
_RS07360
Position (kb)
1568
1569 Strain fitness (log2 ratio)
-1
0
1 at 1568.016 kb on - strand at 1568.016 kb on - strand at 1568.016 kb on - strand at 1568.016 kb on - strand at 1568.017 kb on + strand at 1568.017 kb on + strand at 1568.018 kb on - strand at 1568.018 kb on - strand at 1568.050 kb on - strand at 1568.060 kb on + strand at 1568.060 kb on + strand at 1568.061 kb on - strand at 1568.071 kb on + strand at 1568.092 kb on + strand at 1568.093 kb on - strand at 1568.093 kb on - strand at 1568.093 kb on - strand at 1568.093 kb on - strand at 1568.241 kb on + strand, within RR42_RS07350 at 1568.241 kb on + strand, within RR42_RS07350 at 1568.436 kb on - strand, within RR42_RS07350 at 1568.600 kb on + strand, within RR42_RS07350 at 1568.600 kb on + strand, within RR42_RS07350 at 1568.600 kb on + strand, within RR42_RS07350 at 1568.601 kb on - strand, within RR42_RS07350 at 1568.601 kb on - strand, within RR42_RS07350 at 1568.636 kb on - strand, within RR42_RS07350 at 1568.711 kb on + strand at 1568.711 kb on + strand at 1568.711 kb on + strand at 1568.712 kb on - strand at 1568.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 1,568,016 - -0.2 1,568,016 - -1.5 1,568,016 - -0.7 1,568,016 - -0.4 1,568,017 + +0.2 1,568,017 + -1.0 1,568,018 - +0.2 1,568,018 - +0.8 1,568,050 - +0.9 1,568,060 + -0.1 1,568,060 + +0.4 1,568,061 - -1.5 1,568,071 + +0.1 1,568,092 + -0.7 1,568,093 - +0.8 1,568,093 - +0.5 1,568,093 - +0.7 1,568,093 - +1.1 1,568,241 + RR42_RS07350 0.23 +0.8 1,568,241 + RR42_RS07350 0.23 +0.7 1,568,436 - RR42_RS07350 0.52 +0.7 1,568,600 + RR42_RS07350 0.76 +0.7 1,568,600 + RR42_RS07350 0.76 -0.2 1,568,600 + RR42_RS07350 0.76 +0.9 1,568,601 - RR42_RS07350 0.76 +0.4 1,568,601 - RR42_RS07350 0.76 +0.2 1,568,636 - RR42_RS07350 0.81 -1.3 1,568,711 + +0.5 1,568,711 + -0.1 1,568,711 + +1.0 1,568,712 - +0.3 1,568,712 - -0.3
Or see this region's nucleotide sequence