Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07335

Experiment: R2A with Chlorite 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07330 and RR42_RS07335 are separated by 277 nucleotidesRR42_RS07335 and RR42_RS07340 are separated by 34 nucleotides RR42_RS07330: RR42_RS07330 - histidine utilization repressor, at 1,562,632 to 1,563,345 _RS07330 RR42_RS07335: RR42_RS07335 - MFS transporter, at 1,563,623 to 1,564,843 _RS07335 RR42_RS07340: RR42_RS07340 - oligopeptidase A, at 1,564,878 to 1,566,992 _RS07340 Position (kb) 1563 1564 1565Strain fitness (log2 ratio) -2 -1 0 1 2at 1562.658 kb on + strandat 1562.658 kb on + strandat 1562.658 kb on + strandat 1562.658 kb on + strandat 1562.659 kb on - strandat 1562.659 kb on - strandat 1562.659 kb on - strandat 1562.807 kb on + strand, within RR42_RS07330at 1562.807 kb on + strand, within RR42_RS07330at 1562.843 kb on + strand, within RR42_RS07330at 1562.844 kb on - strand, within RR42_RS07330at 1562.844 kb on - strand, within RR42_RS07330at 1562.844 kb on - strand, within RR42_RS07330at 1562.882 kb on + strand, within RR42_RS07330at 1562.909 kb on + strand, within RR42_RS07330at 1562.910 kb on - strand, within RR42_RS07330at 1562.946 kb on + strand, within RR42_RS07330at 1563.299 kb on + strandat 1563.299 kb on + strandat 1563.299 kb on + strandat 1563.317 kb on + strandat 1563.338 kb on + strandat 1563.338 kb on + strandat 1563.339 kb on - strandat 1563.519 kb on - strandat 1563.630 kb on + strandat 1563.630 kb on + strandat 1563.630 kb on + strandat 1563.630 kb on + strandat 1563.630 kb on + strandat 1563.630 kb on + strandat 1563.631 kb on - strandat 1563.631 kb on - strandat 1563.644 kb on + strandat 1563.645 kb on - strandat 1563.645 kb on - strandat 1563.681 kb on + strandat 1563.681 kb on + strandat 1563.681 kb on + strandat 1563.682 kb on - strandat 1563.696 kb on - strandat 1563.721 kb on + strandat 1563.789 kb on - strand, within RR42_RS07335at 1563.789 kb on - strand, within RR42_RS07335at 1563.791 kb on + strand, within RR42_RS07335at 1563.791 kb on + strand, within RR42_RS07335at 1563.792 kb on - strand, within RR42_RS07335at 1563.792 kb on - strand, within RR42_RS07335at 1563.792 kb on - strand, within RR42_RS07335at 1563.792 kb on - strand, within RR42_RS07335at 1563.804 kb on + strand, within RR42_RS07335at 1563.804 kb on + strand, within RR42_RS07335at 1563.804 kb on + strand, within RR42_RS07335at 1563.968 kb on + strand, within RR42_RS07335at 1564.099 kb on + strand, within RR42_RS07335at 1564.099 kb on + strand, within RR42_RS07335at 1564.099 kb on + strand, within RR42_RS07335at 1564.099 kb on + strand, within RR42_RS07335at 1564.099 kb on + strand, within RR42_RS07335at 1564.099 kb on + strand, within RR42_RS07335at 1564.099 kb on + strand, within RR42_RS07335at 1564.099 kb on + strand, within RR42_RS07335at 1564.099 kb on + strand, within RR42_RS07335at 1564.100 kb on - strand, within RR42_RS07335at 1564.100 kb on - strand, within RR42_RS07335at 1564.100 kb on - strand, within RR42_RS07335at 1564.173 kb on + strand, within RR42_RS07335at 1564.173 kb on + strand, within RR42_RS07335at 1564.301 kb on + strand, within RR42_RS07335at 1564.302 kb on - strand, within RR42_RS07335at 1564.355 kb on - strand, within RR42_RS07335at 1564.364 kb on + strand, within RR42_RS07335at 1564.433 kb on - strand, within RR42_RS07335at 1564.433 kb on - strand, within RR42_RS07335at 1564.433 kb on - strand, within RR42_RS07335at 1564.613 kb on + strand, within RR42_RS07335at 1564.614 kb on - strand, within RR42_RS07335at 1564.676 kb on + strand, within RR42_RS07335at 1564.676 kb on + strand, within RR42_RS07335at 1564.676 kb on + strand, within RR42_RS07335at 1564.677 kb on - strand, within RR42_RS07335at 1564.677 kb on - strand, within RR42_RS07335at 1564.677 kb on - strand, within RR42_RS07335at 1564.677 kb on - strand, within RR42_RS07335at 1564.740 kb on - strandat 1564.740 kb on - strandat 1564.748 kb on + strandat 1564.861 kb on - strandat 1564.861 kb on - strandat 1564.880 kb on - strandat 1564.880 kb on - strandat 1565.065 kb on + strandat 1565.065 kb on + strandat 1565.066 kb on - strandat 1565.066 kb on - strandat 1565.098 kb on + strand, within RR42_RS07340at 1565.098 kb on + strand, within RR42_RS07340at 1565.098 kb on + strand, within RR42_RS07340at 1565.098 kb on + strand, within RR42_RS07340at 1565.098 kb on + strand, within RR42_RS07340at 1565.099 kb on - strand, within RR42_RS07340at 1565.099 kb on - strand, within RR42_RS07340at 1565.099 kb on - strand, within RR42_RS07340at 1565.099 kb on - strand, within RR42_RS07340at 1565.099 kb on - strand, within RR42_RS07340at 1565.099 kb on - strand, within RR42_RS07340at 1565.104 kb on + strand, within RR42_RS07340at 1565.104 kb on + strand, within RR42_RS07340at 1565.104 kb on + strand, within RR42_RS07340at 1565.104 kb on + strand, within RR42_RS07340at 1565.105 kb on - strand, within RR42_RS07340at 1565.105 kb on - strand, within RR42_RS07340at 1565.135 kb on + strand, within RR42_RS07340at 1565.136 kb on - strand, within RR42_RS07340at 1565.507 kb on + strand, within RR42_RS07340at 1565.507 kb on + strand, within RR42_RS07340at 1565.507 kb on + strand, within RR42_RS07340at 1565.507 kb on + strand, within RR42_RS07340at 1565.507 kb on + strand, within RR42_RS07340at 1565.507 kb on + strand, within RR42_RS07340at 1565.508 kb on - strand, within RR42_RS07340at 1565.508 kb on - strand, within RR42_RS07340at 1565.508 kb on - strand, within RR42_RS07340at 1565.508 kb on - strand, within RR42_RS07340at 1565.508 kb on - strand, within RR42_RS07340at 1565.716 kb on + strand, within RR42_RS07340at 1565.716 kb on + strand, within RR42_RS07340at 1565.748 kb on + strand, within RR42_RS07340at 1565.748 kb on + strand, within RR42_RS07340

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM
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1,562,658 + +1.8
1,562,658 + +0.0
1,562,658 + +0.4
1,562,658 + -0.2
1,562,659 - -0.0
1,562,659 - +0.1
1,562,659 - -0.1
1,562,807 + RR42_RS07330 0.25 +0.1
1,562,807 + RR42_RS07330 0.25 -0.7
1,562,843 + RR42_RS07330 0.30 -0.7
1,562,844 - RR42_RS07330 0.30 +0.6
1,562,844 - RR42_RS07330 0.30 +0.2
1,562,844 - RR42_RS07330 0.30 +0.3
1,562,882 + RR42_RS07330 0.35 +1.5
1,562,909 + RR42_RS07330 0.39 +0.1
1,562,910 - RR42_RS07330 0.39 +0.2
1,562,946 + RR42_RS07330 0.44 +2.5
1,563,299 + -0.2
1,563,299 + -0.0
1,563,299 + -0.5
1,563,317 + +0.1
1,563,338 + +0.4
1,563,338 + +0.2
1,563,339 - +1.3
1,563,519 - -0.6
1,563,630 + +0.4
1,563,630 + +1.8
1,563,630 + +0.0
1,563,630 + +0.2
1,563,630 + +0.7
1,563,630 + +0.2
1,563,631 - -0.5
1,563,631 - -1.0
1,563,644 + +0.1
1,563,645 - -0.4
1,563,645 - +0.3
1,563,681 + -0.2
1,563,681 + +0.4
1,563,681 + +0.4
1,563,682 - +0.3
1,563,696 - +0.0
1,563,721 + -0.5
1,563,789 - RR42_RS07335 0.14 +0.6
1,563,789 - RR42_RS07335 0.14 +0.2
1,563,791 + RR42_RS07335 0.14 +1.1
1,563,791 + RR42_RS07335 0.14 +0.4
1,563,792 - RR42_RS07335 0.14 +0.2
1,563,792 - RR42_RS07335 0.14 -0.2
1,563,792 - RR42_RS07335 0.14 +0.7
1,563,792 - RR42_RS07335 0.14 -0.1
1,563,804 + RR42_RS07335 0.15 +0.1
1,563,804 + RR42_RS07335 0.15 +1.5
1,563,804 + RR42_RS07335 0.15 -0.1
1,563,968 + RR42_RS07335 0.28 +0.3
1,564,099 + RR42_RS07335 0.39 +0.3
1,564,099 + RR42_RS07335 0.39 +1.2
1,564,099 + RR42_RS07335 0.39 +1.1
1,564,099 + RR42_RS07335 0.39 -0.4
1,564,099 + RR42_RS07335 0.39 -0.0
1,564,099 + RR42_RS07335 0.39 +0.2
1,564,099 + RR42_RS07335 0.39 +0.5
1,564,099 + RR42_RS07335 0.39 -1.5
1,564,099 + RR42_RS07335 0.39 +0.1
1,564,100 - RR42_RS07335 0.39 +0.4
1,564,100 - RR42_RS07335 0.39 +0.8
1,564,100 - RR42_RS07335 0.39 +0.5
1,564,173 + RR42_RS07335 0.45 -1.5
1,564,173 + RR42_RS07335 0.45 -1.0
1,564,301 + RR42_RS07335 0.56 +0.1
1,564,302 - RR42_RS07335 0.56 +0.6
1,564,355 - RR42_RS07335 0.60 -1.3
1,564,364 + RR42_RS07335 0.61 +0.5
1,564,433 - RR42_RS07335 0.66 +0.4
1,564,433 - RR42_RS07335 0.66 +0.0
1,564,433 - RR42_RS07335 0.66 +1.2
1,564,613 + RR42_RS07335 0.81 +0.9
1,564,614 - RR42_RS07335 0.81 -0.6
1,564,676 + RR42_RS07335 0.86 +0.4
1,564,676 + RR42_RS07335 0.86 +0.9
1,564,676 + RR42_RS07335 0.86 +0.6
1,564,677 - RR42_RS07335 0.86 +0.3
1,564,677 - RR42_RS07335 0.86 -0.2
1,564,677 - RR42_RS07335 0.86 -1.1
1,564,677 - RR42_RS07335 0.86 -0.5
1,564,740 - -0.1
1,564,740 - +1.1
1,564,748 + +0.4
1,564,861 - +0.2
1,564,861 - -1.6
1,564,880 - +0.7
1,564,880 - +0.6
1,565,065 + -0.7
1,565,065 + -1.3
1,565,066 - -0.3
1,565,066 - -0.4
1,565,098 + RR42_RS07340 0.10 +0.0
1,565,098 + RR42_RS07340 0.10 -0.3
1,565,098 + RR42_RS07340 0.10 +0.4
1,565,098 + RR42_RS07340 0.10 +0.4
1,565,098 + RR42_RS07340 0.10 +0.2
1,565,099 - RR42_RS07340 0.10 -2.0
1,565,099 - RR42_RS07340 0.10 -2.7
1,565,099 - RR42_RS07340 0.10 -1.4
1,565,099 - RR42_RS07340 0.10 +0.4
1,565,099 - RR42_RS07340 0.10 +0.8
1,565,099 - RR42_RS07340 0.10 +0.3
1,565,104 + RR42_RS07340 0.11 +0.9
1,565,104 + RR42_RS07340 0.11 +1.2
1,565,104 + RR42_RS07340 0.11 +0.1
1,565,104 + RR42_RS07340 0.11 -1.0
1,565,105 - RR42_RS07340 0.11 +1.1
1,565,105 - RR42_RS07340 0.11 -0.2
1,565,135 + RR42_RS07340 0.12 -0.4
1,565,136 - RR42_RS07340 0.12 -0.3
1,565,507 + RR42_RS07340 0.30 +0.4
1,565,507 + RR42_RS07340 0.30 +0.0
1,565,507 + RR42_RS07340 0.30 +0.6
1,565,507 + RR42_RS07340 0.30 +0.5
1,565,507 + RR42_RS07340 0.30 -0.9
1,565,507 + RR42_RS07340 0.30 -0.2
1,565,508 - RR42_RS07340 0.30 -0.5
1,565,508 - RR42_RS07340 0.30 +0.1
1,565,508 - RR42_RS07340 0.30 +1.3
1,565,508 - RR42_RS07340 0.30 -0.9
1,565,508 - RR42_RS07340 0.30 +0.2
1,565,716 + RR42_RS07340 0.40 +1.6
1,565,716 + RR42_RS07340 0.40 -0.4
1,565,748 + RR42_RS07340 0.41 -0.4
1,565,748 + RR42_RS07340 0.41 -0.4

Or see this region's nucleotide sequence