Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04455 and RR42_RS04460 are separated by 117 nucleotides RR42_RS04460 and RR42_RS04465 are separated by 44 nucleotides
RR42_RS04455: RR42_RS04455 - MFS transporter, at 995,783 to 996,943
_RS04455
RR42_RS04460: RR42_RS04460 - chorismate mutase, at 997,061 to 998,200
_RS04460
RR42_RS04465: RR42_RS04465 - aspartate aminotransferase, at 998,245 to 999,360
_RS04465
Position (kb) 997
998
999 Strain fitness (log2 ratio) -2
-1
0
1
2 at 997.057 kb on + strand at 997.057 kb on + strand at 997.057 kb on + strand at 997.058 kb on - strand at 997.058 kb on - strand at 997.247 kb on + strand, within RR42_RS04460 at 997.247 kb on + strand, within RR42_RS04460 at 997.247 kb on + strand, within RR42_RS04460 at 997.326 kb on + strand, within RR42_RS04460 at 997.443 kb on - strand, within RR42_RS04460 at 997.739 kb on + strand, within RR42_RS04460 at 997.739 kb on + strand, within RR42_RS04460 at 997.994 kb on + strand, within RR42_RS04460 at 997.995 kb on - strand, within RR42_RS04460 at 998.078 kb on + strand, within RR42_RS04460 at 998.078 kb on + strand, within RR42_RS04460 at 998.078 kb on + strand, within RR42_RS04460 at 998.081 kb on + strand, within RR42_RS04460 at 998.081 kb on + strand, within RR42_RS04460 at 998.082 kb on - strand, within RR42_RS04460 at 998.082 kb on - strand, within RR42_RS04460 at 998.082 kb on - strand, within RR42_RS04460 at 998.082 kb on - strand, within RR42_RS04460 at 998.082 kb on - strand, within RR42_RS04460 at 998.082 kb on - strand, within RR42_RS04460 at 998.088 kb on - strand at 998.162 kb on + strand at 998.163 kb on - strand at 998.278 kb on + strand at 998.299 kb on + strand at 998.597 kb on - strand, within RR42_RS04465 at 998.620 kb on + strand, within RR42_RS04465 at 998.737 kb on - strand, within RR42_RS04465 at 998.748 kb on + strand, within RR42_RS04465 at 998.748 kb on + strand, within RR42_RS04465 at 998.749 kb on - strand, within RR42_RS04465 at 998.749 kb on - strand, within RR42_RS04465 at 998.842 kb on + strand, within RR42_RS04465 at 998.842 kb on + strand, within RR42_RS04465 at 998.842 kb on + strand, within RR42_RS04465 at 998.843 kb on - strand, within RR42_RS04465 at 998.843 kb on - strand, within RR42_RS04465 at 998.843 kb on - strand, within RR42_RS04465 at 998.851 kb on + strand, within RR42_RS04465 at 998.851 kb on + strand, within RR42_RS04465 at 998.852 kb on - strand, within RR42_RS04465 at 998.852 kb on - strand, within RR42_RS04465 at 998.852 kb on - strand, within RR42_RS04465 at 998.852 kb on - strand, within RR42_RS04465 at 998.873 kb on - strand, within RR42_RS04465 at 998.899 kb on + strand, within RR42_RS04465 at 998.900 kb on - strand, within RR42_RS04465 at 998.915 kb on + strand, within RR42_RS04465 at 998.938 kb on + strand, within RR42_RS04465 at 998.939 kb on - strand, within RR42_RS04465 at 998.966 kb on - strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 997,057 + -0.2 997,057 + -0.7 997,057 + -0.1 997,058 - +1.5 997,058 - -0.3 997,247 + RR42_RS04460 0.16 -1.0 997,247 + RR42_RS04460 0.16 +1.0 997,247 + RR42_RS04460 0.16 -0.4 997,326 + RR42_RS04460 0.23 -0.2 997,443 - RR42_RS04460 0.34 -0.4 997,739 + RR42_RS04460 0.59 -0.1 997,739 + RR42_RS04460 0.59 -0.6 997,994 + RR42_RS04460 0.82 +0.6 997,995 - RR42_RS04460 0.82 -0.1 998,078 + RR42_RS04460 0.89 -0.7 998,078 + RR42_RS04460 0.89 -0.1 998,078 + RR42_RS04460 0.89 +0.3 998,081 + RR42_RS04460 0.89 -1.2 998,081 + RR42_RS04460 0.89 +0.2 998,082 - RR42_RS04460 0.90 +1.1 998,082 - RR42_RS04460 0.90 +1.1 998,082 - RR42_RS04460 0.90 -0.4 998,082 - RR42_RS04460 0.90 -0.3 998,082 - RR42_RS04460 0.90 -1.1 998,082 - RR42_RS04460 0.90 -0.6 998,088 - +0.1 998,162 + -0.8 998,163 - -2.7 998,278 + -0.0 998,299 + +0.4 998,597 - RR42_RS04465 0.32 +0.1 998,620 + RR42_RS04465 0.34 -1.0 998,737 - RR42_RS04465 0.44 +0.6 998,748 + RR42_RS04465 0.45 +0.7 998,748 + RR42_RS04465 0.45 -0.3 998,749 - RR42_RS04465 0.45 +0.3 998,749 - RR42_RS04465 0.45 -0.9 998,842 + RR42_RS04465 0.53 +0.3 998,842 + RR42_RS04465 0.53 -0.6 998,842 + RR42_RS04465 0.53 -2.7 998,843 - RR42_RS04465 0.54 -0.7 998,843 - RR42_RS04465 0.54 -1.0 998,843 - RR42_RS04465 0.54 +0.3 998,851 + RR42_RS04465 0.54 -0.8 998,851 + RR42_RS04465 0.54 -0.4 998,852 - RR42_RS04465 0.54 -0.8 998,852 - RR42_RS04465 0.54 +0.7 998,852 - RR42_RS04465 0.54 +0.8 998,852 - RR42_RS04465 0.54 +0.1 998,873 - RR42_RS04465 0.56 -0.2 998,899 + RR42_RS04465 0.59 -0.2 998,900 - RR42_RS04465 0.59 +0.0 998,915 + RR42_RS04465 0.60 -0.0 998,938 + RR42_RS04465 0.62 +0.4 998,939 - RR42_RS04465 0.62 -0.3 998,966 - RR42_RS04465 0.65 +2.0 999,154 + RR42_RS04465 0.81 +0.1 999,154 + RR42_RS04465 0.81 -0.6 999,154 + RR42_RS04465 0.81 +0.1 999,154 + RR42_RS04465 0.81 -0.2 999,154 + RR42_RS04465 0.81 -0.2 999,155 - RR42_RS04465 0.82 +0.9 999,155 - RR42_RS04465 0.82 -0.0 999,155 - RR42_RS04465 0.82 -0.6 999,155 - RR42_RS04465 0.82 -0.5 999,155 - RR42_RS04465 0.82 -0.6 999,155 - RR42_RS04465 0.82 +0.1 999,155 - RR42_RS04465 0.82 -0.3
Or see this region's nucleotide sequence