Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04130 and RR42_RS04135 are separated by 79 nucleotides RR42_RS04135 and RR42_RS04140 are separated by 100 nucleotides
RR42_RS04130: RR42_RS04130 - secretin, at 912,536 to 914,383
_RS04130
RR42_RS04135: RR42_RS04135 - pilus assembly protein CpaB, at 914,463 to 915,311
_RS04135
RR42_RS04140: RR42_RS04140 - ATPase, at 915,412 to 916,770
_RS04140
Position (kb) 914
915
916 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 913.747 kb on - strand, within RR42_RS04130 at 913.983 kb on + strand, within RR42_RS04130 at 913.984 kb on - strand, within RR42_RS04130 at 914.098 kb on + strand, within RR42_RS04130 at 914.099 kb on - strand, within RR42_RS04130 at 914.369 kb on - strand at 914.409 kb on + strand at 914.410 kb on - strand at 914.421 kb on - strand at 914.433 kb on + strand at 914.434 kb on - strand at 914.952 kb on + strand, within RR42_RS04135 at 915.442 kb on - strand at 915.866 kb on - strand, within RR42_RS04140 at 915.896 kb on + strand, within RR42_RS04140 at 915.896 kb on + strand, within RR42_RS04140 at 915.897 kb on - strand, within RR42_RS04140 at 915.897 kb on - strand, within RR42_RS04140 at 915.918 kb on + strand, within RR42_RS04140 at 915.918 kb on + strand, within RR42_RS04140 at 915.919 kb on - strand, within RR42_RS04140 at 915.935 kb on + strand, within RR42_RS04140 at 915.936 kb on - strand, within RR42_RS04140 at 916.125 kb on + strand, within RR42_RS04140 at 916.184 kb on + strand, within RR42_RS04140 at 916.184 kb on + strand, within RR42_RS04140 at 916.185 kb on - strand, within RR42_RS04140 at 916.211 kb on + strand, within RR42_RS04140 at 916.212 kb on - strand, within RR42_RS04140 at 916.302 kb on + strand, within RR42_RS04140 at 916.303 kb on - strand, within RR42_RS04140
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 913,747 - RR42_RS04130 0.66 +0.6 913,983 + RR42_RS04130 0.78 -1.6 913,984 - RR42_RS04130 0.78 +0.1 914,098 + RR42_RS04130 0.85 -0.4 914,099 - RR42_RS04130 0.85 -0.7 914,369 - +0.8 914,409 + -0.2 914,410 - -0.0 914,421 - -0.1 914,433 + +0.3 914,434 - -0.9 914,952 + RR42_RS04135 0.58 -1.0 915,442 - -0.3 915,866 - RR42_RS04140 0.33 -0.4 915,896 + RR42_RS04140 0.36 +0.4 915,896 + RR42_RS04140 0.36 -0.4 915,897 - RR42_RS04140 0.36 +1.2 915,897 - RR42_RS04140 0.36 -0.6 915,918 + RR42_RS04140 0.37 +0.2 915,918 + RR42_RS04140 0.37 +0.4 915,919 - RR42_RS04140 0.37 -0.0 915,935 + RR42_RS04140 0.38 +0.1 915,936 - RR42_RS04140 0.39 -3.1 916,125 + RR42_RS04140 0.52 +0.9 916,184 + RR42_RS04140 0.57 -1.0 916,184 + RR42_RS04140 0.57 -0.5 916,185 - RR42_RS04140 0.57 +0.1 916,211 + RR42_RS04140 0.59 -1.7 916,212 - RR42_RS04140 0.59 -1.4 916,302 + RR42_RS04140 0.65 -0.4 916,303 - RR42_RS04140 0.66 -0.1
Or see this region's nucleotide sequence