Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03815 and RR42_RS03820 are separated by 125 nucleotides RR42_RS03820 and RR42_RS03825 are separated by 110 nucleotides RR42_RS03825 and RR42_RS03830 are separated by 7 nucleotides
RR42_RS03815: RR42_RS03815 - short-chain dehydrogenase, at 843,338 to 844,117
_RS03815
RR42_RS03820: RR42_RS03820 - molybdenum cofactor biosynthesis protein MoaA, at 844,243 to 844,485
_RS03820
RR42_RS03825: RR42_RS03825 - ModE family transcriptional regulator, at 844,596 to 845,399
_RS03825
RR42_RS03830: RR42_RS03830 - molybdenum ABC transporter ATPase, at 845,407 to 846,129
_RS03830
Position (kb)
844
845 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 843.293 kb on + strand at 843.348 kb on + strand at 843.349 kb on - strand at 843.468 kb on - strand, within RR42_RS03815 at 843.485 kb on + strand, within RR42_RS03815 at 843.786 kb on - strand, within RR42_RS03815 at 843.815 kb on + strand, within RR42_RS03815 at 843.864 kb on - strand, within RR42_RS03815 at 844.040 kb on + strand at 844.085 kb on + strand at 844.085 kb on + strand at 844.086 kb on - strand at 844.174 kb on - strand at 844.183 kb on + strand at 844.183 kb on + strand at 844.184 kb on - strand at 844.229 kb on - strand at 844.313 kb on - strand, within RR42_RS03820 at 844.313 kb on - strand, within RR42_RS03820 at 844.387 kb on - strand, within RR42_RS03820 at 844.462 kb on + strand at 844.463 kb on - strand at 844.463 kb on - strand at 844.463 kb on - strand at 844.463 kb on - strand at 844.463 kb on - strand at 844.540 kb on - strand at 844.540 kb on - strand at 844.545 kb on - strand at 844.545 kb on - strand at 844.600 kb on + strand at 844.601 kb on - strand at 844.601 kb on - strand at 844.732 kb on - strand, within RR42_RS03825 at 844.864 kb on - strand, within RR42_RS03825 at 845.078 kb on - strand, within RR42_RS03825 at 845.436 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 843,293 + -1.3 843,348 + +0.0 843,349 - -0.4 843,468 - RR42_RS03815 0.17 -0.7 843,485 + RR42_RS03815 0.19 +0.1 843,786 - RR42_RS03815 0.57 -0.1 843,815 + RR42_RS03815 0.61 -0.8 843,864 - RR42_RS03815 0.67 +0.7 844,040 + -0.7 844,085 + +0.2 844,085 + -0.4 844,086 - +0.2 844,174 - +2.0 844,183 + +0.1 844,183 + +0.6 844,184 - -1.3 844,229 - +0.9 844,313 - RR42_RS03820 0.29 +0.2 844,313 - RR42_RS03820 0.29 -0.4 844,387 - RR42_RS03820 0.59 +0.0 844,462 + +0.1 844,463 - +1.0 844,463 - -0.3 844,463 - -0.4 844,463 - -1.8 844,463 - -0.3 844,540 - +0.2 844,540 - +0.5 844,545 - -0.3 844,545 - +0.1 844,600 + +0.1 844,601 - +0.3 844,601 - +0.1 844,732 - RR42_RS03825 0.17 -0.7 844,864 - RR42_RS03825 0.33 -0.6 845,078 - RR42_RS03825 0.60 -0.5 845,436 - +1.3
Or see this region's nucleotide sequence