Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03365

Experiment: R2A with Chlorite 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03360 and RR42_RS03365 are separated by 103 nucleotidesRR42_RS03365 and RR42_RS03370 are separated by 39 nucleotides RR42_RS03360: RR42_RS03360 - fructose ABC transporter, ATPase component (FrcA) (from data), at 746,637 to 748,250 _RS03360 RR42_RS03365: RR42_RS03365 - fructose ABC transporter, permease component (FrcC) (from data), at 748,354 to 749,355 _RS03365 RR42_RS03370: RR42_RS03370 - fructose ABC transporter, substrate-binding component (FrcB) (from data), at 749,395 to 750,372 _RS03370 Position (kb) 748 749 750Strain fitness (log2 ratio) -2 -1 0 1at 747.390 kb on + strand, within RR42_RS03360at 747.390 kb on + strand, within RR42_RS03360at 747.390 kb on + strand, within RR42_RS03360at 747.675 kb on + strand, within RR42_RS03360at 748.467 kb on - strand, within RR42_RS03365at 748.875 kb on - strand, within RR42_RS03365at 748.967 kb on - strand, within RR42_RS03365at 749.038 kb on + strand, within RR42_RS03365at 749.039 kb on - strand, within RR42_RS03365at 749.095 kb on + strand, within RR42_RS03365at 749.129 kb on - strand, within RR42_RS03365at 749.278 kb on + strandat 749.278 kb on + strandat 749.278 kb on + strandat 749.554 kb on + strand, within RR42_RS03370at 749.671 kb on - strand, within RR42_RS03370at 750.040 kb on + strand, within RR42_RS03370at 750.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM
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747,390 + RR42_RS03360 0.47 -0.3
747,390 + RR42_RS03360 0.47 -1.1
747,390 + RR42_RS03360 0.47 -0.8
747,675 + RR42_RS03360 0.64 -0.5
748,467 - RR42_RS03365 0.11 -0.1
748,875 - RR42_RS03365 0.52 -1.8
748,967 - RR42_RS03365 0.61 +0.4
749,038 + RR42_RS03365 0.68 -0.8
749,039 - RR42_RS03365 0.68 -2.1
749,095 + RR42_RS03365 0.74 -0.1
749,129 - RR42_RS03365 0.77 -0.4
749,278 + +0.5
749,278 + +0.1
749,278 + -1.4
749,554 + RR42_RS03370 0.16 -0.9
749,671 - RR42_RS03370 0.28 -0.1
750,040 + RR42_RS03370 0.66 -0.3
750,346 + +1.2

Or see this region's nucleotide sequence