Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02430 and RR42_RS02435 are separated by 199 nucleotides RR42_RS02435 and RR42_RS02440 are separated by 14 nucleotides RR42_RS02440 and RR42_RS02445 are separated by 43 nucleotides
RR42_RS02430: RR42_RS02430 - sodium:solute symporter, at 546,799 to 548,235
_RS02430
RR42_RS02435: RR42_RS02435 - FmdB family transcriptional regulator, at 548,435 to 548,794
_RS02435
RR42_RS02440: RR42_RS02440 - membrane protein, at 548,809 to 549,507
_RS02440
RR42_RS02445: RR42_RS02445 - aspartyl-tRNA synthetase, at 549,551 to 551,356
_RS02445
Position (kb) 548
549 Strain fitness (log2 ratio) -2
-1
0
1 at 547.606 kb on + strand, within RR42_RS02430 at 547.681 kb on + strand, within RR42_RS02430 at 547.681 kb on + strand, within RR42_RS02430 at 547.681 kb on + strand, within RR42_RS02430 at 547.681 kb on + strand, within RR42_RS02430 at 547.682 kb on - strand, within RR42_RS02430 at 547.682 kb on - strand, within RR42_RS02430 at 547.682 kb on - strand, within RR42_RS02430 at 547.837 kb on - strand, within RR42_RS02430 at 547.849 kb on + strand, within RR42_RS02430 at 547.978 kb on + strand, within RR42_RS02430 at 547.979 kb on - strand, within RR42_RS02430 at 547.980 kb on + strand, within RR42_RS02430 at 547.981 kb on + strand, within RR42_RS02430 at 547.981 kb on - strand, within RR42_RS02430 at 547.981 kb on - strand, within RR42_RS02430 at 547.981 kb on - strand, within RR42_RS02430 at 548.434 kb on + strand at 548.444 kb on + strand at 549.093 kb on + strand, within RR42_RS02440 at 549.385 kb on + strand, within RR42_RS02440
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 547,606 + RR42_RS02430 0.56 -0.3 547,681 + RR42_RS02430 0.61 +0.3 547,681 + RR42_RS02430 0.61 -0.8 547,681 + RR42_RS02430 0.61 -0.5 547,681 + RR42_RS02430 0.61 +0.4 547,682 - RR42_RS02430 0.61 +0.1 547,682 - RR42_RS02430 0.61 -0.6 547,682 - RR42_RS02430 0.61 +0.8 547,837 - RR42_RS02430 0.72 -0.2 547,849 + RR42_RS02430 0.73 +0.4 547,978 + RR42_RS02430 0.82 -0.3 547,979 - RR42_RS02430 0.82 -0.1 547,980 + RR42_RS02430 0.82 +0.6 547,981 + RR42_RS02430 0.82 +1.0 547,981 - RR42_RS02430 0.82 -0.3 547,981 - RR42_RS02430 0.82 -0.6 547,981 - RR42_RS02430 0.82 +0.4 548,434 + -1.2 548,444 + -0.0 549,093 + RR42_RS02440 0.41 -1.1 549,385 + RR42_RS02440 0.82 -2.6
Or see this region's nucleotide sequence