Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02115 and RR42_RS02120 are separated by 68 nucleotides RR42_RS02120 and RR42_RS02125 are separated by 161 nucleotides RR42_RS02125 and RR42_RS02130 are separated by 270 nucleotides
RR42_RS02115: RR42_RS02115 - arylsulfate sulfotransferase, at 470,135 to 470,518
_RS02115
RR42_RS02120: RR42_RS02120 - glutamine amidotransferase, at 470,587 to 471,165
_RS02120
RR42_RS02125: RR42_RS02125 - adenine phosphoribosyltransferase, at 471,327 to 471,899
_RS02125
RR42_RS02130: RR42_RS02130 - membrane protein, at 472,170 to 473,855
_RS02130
Position (kb) 471
472 Strain fitness (log2 ratio) -2
-1
0
1 at 470.329 kb on - strand, within RR42_RS02115 at 470.445 kb on - strand, within RR42_RS02115 at 470.518 kb on + strand at 470.518 kb on + strand at 470.518 kb on + strand at 470.519 kb on - strand at 470.588 kb on + strand at 470.588 kb on + strand at 470.589 kb on - strand at 470.593 kb on + strand at 470.594 kb on - strand at 470.711 kb on + strand, within RR42_RS02120 at 470.711 kb on + strand, within RR42_RS02120 at 470.832 kb on + strand, within RR42_RS02120 at 470.832 kb on + strand, within RR42_RS02120 at 470.888 kb on + strand, within RR42_RS02120 at 470.888 kb on + strand, within RR42_RS02120 at 470.991 kb on + strand, within RR42_RS02120 at 470.992 kb on - strand, within RR42_RS02120 at 470.993 kb on + strand, within RR42_RS02120 at 470.993 kb on + strand, within RR42_RS02120 at 470.993 kb on + strand, within RR42_RS02120 at 470.993 kb on + strand, within RR42_RS02120 at 470.993 kb on + strand, within RR42_RS02120 at 470.994 kb on - strand, within RR42_RS02120 at 470.994 kb on - strand, within RR42_RS02120 at 470.994 kb on - strand, within RR42_RS02120 at 471.075 kb on + strand, within RR42_RS02120 at 471.076 kb on - strand, within RR42_RS02120 at 471.076 kb on - strand, within RR42_RS02120 at 471.120 kb on - strand at 471.178 kb on + strand at 471.178 kb on + strand at 471.178 kb on + strand at 471.178 kb on + strand at 471.179 kb on - strand at 471.336 kb on - strand at 471.336 kb on - strand at 471.336 kb on - strand at 471.336 kb on - strand at 471.375 kb on + strand at 471.376 kb on - strand at 471.502 kb on - strand, within RR42_RS02125 at 471.573 kb on + strand, within RR42_RS02125 at 471.573 kb on + strand, within RR42_RS02125 at 471.657 kb on + strand, within RR42_RS02125 at 471.657 kb on + strand, within RR42_RS02125 at 471.657 kb on + strand, within RR42_RS02125 at 471.658 kb on - strand, within RR42_RS02125 at 472.081 kb on - strand at 472.100 kb on + strand at 472.101 kb on - strand at 472.101 kb on - strand at 472.150 kb on + strand at 472.150 kb on + strand at 472.150 kb on + strand at 472.151 kb on - strand at 472.151 kb on - strand at 472.158 kb on + strand at 472.159 kb on - strand at 472.177 kb on + strand at 472.177 kb on + strand at 472.178 kb on - strand at 472.178 kb on - strand at 472.178 kb on - strand at 472.178 kb on - strand at 472.180 kb on + strand at 472.181 kb on - strand at 472.254 kb on + strand at 472.255 kb on - strand at 472.255 kb on - strand at 472.255 kb on - strand at 472.726 kb on - strand, within RR42_RS02130
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 470,329 - RR42_RS02115 0.51 -1.3 470,445 - RR42_RS02115 0.81 -0.2 470,518 + +1.1 470,518 + +0.4 470,518 + -0.3 470,519 - +0.6 470,588 + +0.1 470,588 + +1.1 470,589 - +0.6 470,593 + -0.3 470,594 - +0.2 470,711 + RR42_RS02120 0.21 +0.7 470,711 + RR42_RS02120 0.21 -0.4 470,832 + RR42_RS02120 0.42 +0.9 470,832 + RR42_RS02120 0.42 +0.2 470,888 + RR42_RS02120 0.52 -0.1 470,888 + RR42_RS02120 0.52 -0.0 470,991 + RR42_RS02120 0.70 -1.3 470,992 - RR42_RS02120 0.70 -1.2 470,993 + RR42_RS02120 0.70 +0.4 470,993 + RR42_RS02120 0.70 -1.1 470,993 + RR42_RS02120 0.70 +0.9 470,993 + RR42_RS02120 0.70 -0.4 470,993 + RR42_RS02120 0.70 -0.6 470,994 - RR42_RS02120 0.70 +1.6 470,994 - RR42_RS02120 0.70 -0.2 470,994 - RR42_RS02120 0.70 -0.1 471,075 + RR42_RS02120 0.84 -1.4 471,076 - RR42_RS02120 0.84 -0.7 471,076 - RR42_RS02120 0.84 +0.1 471,120 - -0.1 471,178 + +0.3 471,178 + +1.1 471,178 + +0.1 471,178 + -0.4 471,179 - -0.6 471,336 - -1.9 471,336 - -1.3 471,336 - +0.5 471,336 - -0.0 471,375 + +0.2 471,376 - -0.1 471,502 - RR42_RS02125 0.31 -0.4 471,573 + RR42_RS02125 0.43 -0.7 471,573 + RR42_RS02125 0.43 -1.2 471,657 + RR42_RS02125 0.58 +0.7 471,657 + RR42_RS02125 0.58 -1.1 471,657 + RR42_RS02125 0.58 -0.8 471,658 - RR42_RS02125 0.58 -0.2 472,081 - +0.6 472,100 + -0.2 472,101 - +0.4 472,101 - -0.8 472,150 + -0.2 472,150 + +0.3 472,150 + -0.6 472,151 - +0.3 472,151 - -0.2 472,158 + +0.5 472,159 - +0.6 472,177 + -0.6 472,177 + -0.2 472,178 - -0.4 472,178 - -0.7 472,178 - -0.1 472,178 - +1.4 472,180 + +0.2 472,181 - -0.2 472,254 + +0.4 472,255 - +0.1 472,255 - +0.8 472,255 - -0.6 472,726 - RR42_RS02130 0.33 +0.9
Or see this region's nucleotide sequence