Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01590 and RR42_RS01595 are separated by 183 nucleotides RR42_RS01595 and RR42_RS01600 are separated by 367 nucleotides RR42_RS01600 and RR42_RS01605 are separated by 111 nucleotides RR42_RS01605 and RR42_RS01610 are separated by 72 nucleotides
RR42_RS01590: RR42_RS01590 - GntR family transcriptional regulator, at 359,928 to 361,334
_RS01590
RR42_RS01595: RR42_RS01595 - hypothetical protein, at 361,518 to 361,856
_RS01595
RR42_RS01600: RR42_RS01600 - methylmalonyl-CoA mutase, at 362,224 to 365,532
_RS01600
RR42_RS01605: RR42_RS01605 - hydrolase, at 365,644 to 366,078
_RS01605
RR42_RS01610: RR42_RS01610 - 3-hydroxybutyryl-CoA dehydrogenase, at 366,151 to 367,005
_RS01610
Position (kb) 362
363
364
365
366 Strain fitness (log2 ratio) -2
-1
0
1 at 361.414 kb on + strand at 361.415 kb on - strand at 361.430 kb on + strand at 361.430 kb on + strand at 361.431 kb on - strand at 361.431 kb on - strand at 361.431 kb on - strand at 361.528 kb on + strand at 361.529 kb on - strand at 361.529 kb on - strand at 361.912 kb on + strand at 361.912 kb on + strand at 361.918 kb on + strand at 361.918 kb on + strand at 361.919 kb on - strand at 361.919 kb on - strand at 361.919 kb on - strand at 362.022 kb on + strand at 362.023 kb on - strand at 362.023 kb on - strand at 362.039 kb on - strand at 362.039 kb on - strand at 362.039 kb on - strand at 362.095 kb on + strand at 362.428 kb on - strand at 362.527 kb on + strand at 362.527 kb on + strand at 362.629 kb on + strand, within RR42_RS01600 at 362.630 kb on - strand, within RR42_RS01600 at 362.732 kb on - strand, within RR42_RS01600 at 363.230 kb on - strand, within RR42_RS01600 at 363.818 kb on - strand, within RR42_RS01600 at 363.833 kb on - strand, within RR42_RS01600 at 363.988 kb on + strand, within RR42_RS01600 at 364.180 kb on + strand, within RR42_RS01600 at 364.181 kb on - strand, within RR42_RS01600 at 364.241 kb on - strand, within RR42_RS01600 at 364.535 kb on - strand, within RR42_RS01600 at 364.655 kb on - strand, within RR42_RS01600 at 364.667 kb on - strand, within RR42_RS01600 at 364.802 kb on - strand, within RR42_RS01600 at 364.834 kb on + strand, within RR42_RS01600 at 364.835 kb on - strand, within RR42_RS01600 at 365.209 kb on + strand at 365.213 kb on - strand at 365.213 kb on - strand at 365.259 kb on + strand at 365.259 kb on + strand at 365.260 kb on - strand at 365.505 kb on - strand at 365.526 kb on + strand at 365.527 kb on - strand at 365.572 kb on + strand at 365.653 kb on - strand at 365.674 kb on - strand at 365.674 kb on - strand at 365.717 kb on + strand, within RR42_RS01605 at 365.717 kb on + strand, within RR42_RS01605 at 365.718 kb on - strand, within RR42_RS01605 at 365.718 kb on - strand, within RR42_RS01605 at 365.720 kb on - strand, within RR42_RS01605 at 365.777 kb on + strand, within RR42_RS01605 at 365.778 kb on - strand, within RR42_RS01605 at 366.237 kb on - strand, within RR42_RS01610 at 366.237 kb on - strand, within RR42_RS01610 at 366.380 kb on - strand, within RR42_RS01610 at 366.380 kb on - strand, within RR42_RS01610 at 366.380 kb on - strand, within RR42_RS01610 at 366.380 kb on - strand, within RR42_RS01610
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 361,414 + +0.5 361,415 - -0.3 361,430 + +0.8 361,430 + +0.1 361,431 - +0.3 361,431 - -0.1 361,431 - -0.1 361,528 + -0.5 361,529 - +0.2 361,529 - +0.4 361,912 + -0.0 361,912 + -0.8 361,918 + -0.6 361,918 + -0.7 361,919 - -0.6 361,919 - +0.2 361,919 - +0.4 362,022 + -0.7 362,023 - +0.0 362,023 - -0.5 362,039 - +0.3 362,039 - +0.0 362,039 - -0.1 362,095 + +0.1 362,428 - +0.2 362,527 + -1.0 362,527 + -0.0 362,629 + RR42_RS01600 0.12 -0.0 362,630 - RR42_RS01600 0.12 -1.1 362,732 - RR42_RS01600 0.15 -0.3 363,230 - RR42_RS01600 0.30 +0.1 363,818 - RR42_RS01600 0.48 +0.1 363,833 - RR42_RS01600 0.49 +1.0 363,988 + RR42_RS01600 0.53 -0.3 364,180 + RR42_RS01600 0.59 +0.2 364,181 - RR42_RS01600 0.59 -0.0 364,241 - RR42_RS01600 0.61 +1.4 364,535 - RR42_RS01600 0.70 -0.9 364,655 - RR42_RS01600 0.73 +0.7 364,667 - RR42_RS01600 0.74 -0.7 364,802 - RR42_RS01600 0.78 -0.8 364,834 + RR42_RS01600 0.79 -0.5 364,835 - RR42_RS01600 0.79 -0.8 365,209 + -1.0 365,213 - -0.5 365,213 - -1.6 365,259 + -0.4 365,259 + -0.6 365,260 - +1.3 365,505 - -1.4 365,526 + -1.9 365,527 - -0.4 365,572 + -0.4 365,653 - -0.1 365,674 - +1.1 365,674 - +0.7 365,717 + RR42_RS01605 0.17 +0.7 365,717 + RR42_RS01605 0.17 +1.3 365,718 - RR42_RS01605 0.17 +0.0 365,718 - RR42_RS01605 0.17 -0.0 365,720 - RR42_RS01605 0.17 +1.2 365,777 + RR42_RS01605 0.31 +1.0 365,778 - RR42_RS01605 0.31 +1.2 366,237 - RR42_RS01610 0.10 -1.1 366,237 - RR42_RS01610 0.10 -0.8 366,380 - RR42_RS01610 0.27 -0.9 366,380 - RR42_RS01610 0.27 +1.0 366,380 - RR42_RS01610 0.27 +0.5 366,380 - RR42_RS01610 0.27 +0.3
Or see this region's nucleotide sequence