Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01585

Experiment: R2A with Chlorite 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01580 and RR42_RS01585 are separated by 149 nucleotidesRR42_RS01585 and RR42_RS01590 are separated by 12 nucleotides RR42_RS01580: RR42_RS01580 - methylmalonate-semialdehyde dehydrogenase, at 356,854 to 358,371 _RS01580 RR42_RS01585: RR42_RS01585 - amino acid permease, at 358,521 to 359,915 _RS01585 RR42_RS01590: RR42_RS01590 - GntR family transcriptional regulator, at 359,928 to 361,334 _RS01590 Position (kb) 358 359 360Strain fitness (log2 ratio) -2 -1 0 1 2at 357.571 kb on + strand, within RR42_RS01580at 357.572 kb on - strand, within RR42_RS01580at 357.578 kb on - strand, within RR42_RS01580at 357.697 kb on + strand, within RR42_RS01580at 357.698 kb on - strand, within RR42_RS01580at 357.880 kb on + strand, within RR42_RS01580at 357.880 kb on + strand, within RR42_RS01580at 357.880 kb on + strand, within RR42_RS01580at 357.881 kb on - strand, within RR42_RS01580at 357.964 kb on + strand, within RR42_RS01580at 357.964 kb on + strand, within RR42_RS01580at 357.965 kb on - strand, within RR42_RS01580at 357.965 kb on - strand, within RR42_RS01580at 357.965 kb on - strand, within RR42_RS01580at 358.012 kb on + strand, within RR42_RS01580at 358.013 kb on - strand, within RR42_RS01580at 358.013 kb on - strand, within RR42_RS01580at 358.013 kb on - strand, within RR42_RS01580at 358.120 kb on + strand, within RR42_RS01580at 358.120 kb on + strand, within RR42_RS01580at 358.120 kb on + strand, within RR42_RS01580at 358.264 kb on + strandat 358.265 kb on - strandat 358.265 kb on - strandat 358.289 kb on - strandat 358.298 kb on - strandat 358.350 kb on + strandat 358.365 kb on + strandat 358.366 kb on - strandat 358.366 kb on - strandat 358.747 kb on - strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.789 kb on - strand, within RR42_RS01585at 358.789 kb on - strand, within RR42_RS01585at 358.789 kb on - strand, within RR42_RS01585at 358.789 kb on - strand, within RR42_RS01585at 358.794 kb on + strand, within RR42_RS01585at 358.794 kb on + strand, within RR42_RS01585at 358.794 kb on + strand, within RR42_RS01585at 358.795 kb on - strand, within RR42_RS01585at 358.795 kb on - strand, within RR42_RS01585at 358.795 kb on - strand, within RR42_RS01585at 358.795 kb on - strand, within RR42_RS01585at 358.795 kb on - strand, within RR42_RS01585at 358.795 kb on - strand, within RR42_RS01585at 358.796 kb on + strand, within RR42_RS01585at 358.796 kb on + strand, within RR42_RS01585at 358.796 kb on + strand, within RR42_RS01585at 358.796 kb on + strand, within RR42_RS01585at 358.796 kb on + strand, within RR42_RS01585at 358.797 kb on - strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.857 kb on + strand, within RR42_RS01585at 358.857 kb on + strand, within RR42_RS01585at 358.857 kb on + strand, within RR42_RS01585at 358.858 kb on - strand, within RR42_RS01585at 358.858 kb on - strand, within RR42_RS01585at 358.899 kb on + strand, within RR42_RS01585at 359.216 kb on + strand, within RR42_RS01585at 359.319 kb on + strand, within RR42_RS01585at 359.319 kb on + strand, within RR42_RS01585at 359.319 kb on + strand, within RR42_RS01585at 359.320 kb on - strand, within RR42_RS01585at 359.320 kb on - strand, within RR42_RS01585at 359.320 kb on - strand, within RR42_RS01585at 359.406 kb on + strand, within RR42_RS01585at 359.868 kb on + strandat 359.868 kb on + strandat 359.869 kb on - strandat 359.869 kb on - strandat 360.037 kb on + strandat 360.113 kb on + strand, within RR42_RS01590at 360.114 kb on - strand, within RR42_RS01590at 360.151 kb on + strand, within RR42_RS01590at 360.151 kb on + strand, within RR42_RS01590at 360.232 kb on + strand, within RR42_RS01590at 360.232 kb on + strand, within RR42_RS01590at 360.232 kb on + strand, within RR42_RS01590at 360.232 kb on + strand, within RR42_RS01590at 360.233 kb on - strand, within RR42_RS01590at 360.358 kb on + strand, within RR42_RS01590at 360.407 kb on - strand, within RR42_RS01590at 360.407 kb on - strand, within RR42_RS01590at 360.452 kb on - strand, within RR42_RS01590at 360.452 kb on - strand, within RR42_RS01590at 360.452 kb on - strand, within RR42_RS01590at 360.476 kb on + strand, within RR42_RS01590at 360.477 kb on - strand, within RR42_RS01590at 360.477 kb on - strand, within RR42_RS01590at 360.710 kb on - strand, within RR42_RS01590at 360.712 kb on + strand, within RR42_RS01590at 360.737 kb on + strand, within RR42_RS01590at 360.892 kb on + strand, within RR42_RS01590

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM
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357,571 + RR42_RS01580 0.47 -0.6
357,572 - RR42_RS01580 0.47 -0.2
357,578 - RR42_RS01580 0.48 +0.7
357,697 + RR42_RS01580 0.56 +0.4
357,698 - RR42_RS01580 0.56 -0.7
357,880 + RR42_RS01580 0.68 -1.1
357,880 + RR42_RS01580 0.68 -0.1
357,880 + RR42_RS01580 0.68 -0.3
357,881 - RR42_RS01580 0.68 -0.1
357,964 + RR42_RS01580 0.73 +0.6
357,964 + RR42_RS01580 0.73 +1.9
357,965 - RR42_RS01580 0.73 -0.5
357,965 - RR42_RS01580 0.73 -0.0
357,965 - RR42_RS01580 0.73 +0.8
358,012 + RR42_RS01580 0.76 +0.9
358,013 - RR42_RS01580 0.76 -0.5
358,013 - RR42_RS01580 0.76 +0.1
358,013 - RR42_RS01580 0.76 -0.6
358,120 + RR42_RS01580 0.83 +0.6
358,120 + RR42_RS01580 0.83 +1.3
358,120 + RR42_RS01580 0.83 +1.2
358,264 + -0.2
358,265 - -0.1
358,265 - -0.0
358,289 - +0.5
358,298 - +0.3
358,350 + -0.1
358,365 + +0.4
358,366 - +2.6
358,366 - -0.1
358,747 - RR42_RS01585 0.16 -0.5
358,788 + RR42_RS01585 0.19 -1.3
358,788 + RR42_RS01585 0.19 -0.8
358,788 + RR42_RS01585 0.19 -0.3
358,788 + RR42_RS01585 0.19 +0.2
358,788 + RR42_RS01585 0.19 +1.2
358,788 + RR42_RS01585 0.19 -0.3
358,788 + RR42_RS01585 0.19 +0.6
358,789 - RR42_RS01585 0.19 +0.6
358,789 - RR42_RS01585 0.19 -1.2
358,789 - RR42_RS01585 0.19 -0.9
358,789 - RR42_RS01585 0.19 -0.3
358,794 + RR42_RS01585 0.20 +1.1
358,794 + RR42_RS01585 0.20 +0.6
358,794 + RR42_RS01585 0.20 +1.4
358,795 - RR42_RS01585 0.20 +0.2
358,795 - RR42_RS01585 0.20 -0.3
358,795 - RR42_RS01585 0.20 -0.7
358,795 - RR42_RS01585 0.20 -0.6
358,795 - RR42_RS01585 0.20 +0.5
358,795 - RR42_RS01585 0.20 -0.2
358,796 + RR42_RS01585 0.20 -0.1
358,796 + RR42_RS01585 0.20 -1.0
358,796 + RR42_RS01585 0.20 -0.1
358,796 + RR42_RS01585 0.20 -0.8
358,796 + RR42_RS01585 0.20 -0.9
358,797 - RR42_RS01585 0.20 -0.5
358,800 + RR42_RS01585 0.20 -0.0
358,800 + RR42_RS01585 0.20 +0.4
358,800 + RR42_RS01585 0.20 -0.8
358,800 + RR42_RS01585 0.20 -1.1
358,800 + RR42_RS01585 0.20 -0.3
358,800 + RR42_RS01585 0.20 -0.5
358,800 + RR42_RS01585 0.20 -0.5
358,857 + RR42_RS01585 0.24 +1.6
358,857 + RR42_RS01585 0.24 +1.2
358,857 + RR42_RS01585 0.24 -0.7
358,858 - RR42_RS01585 0.24 +0.1
358,858 - RR42_RS01585 0.24 +0.1
358,899 + RR42_RS01585 0.27 +0.9
359,216 + RR42_RS01585 0.50 -0.4
359,319 + RR42_RS01585 0.57 +0.1
359,319 + RR42_RS01585 0.57 -0.1
359,319 + RR42_RS01585 0.57 +0.4
359,320 - RR42_RS01585 0.57 +0.3
359,320 - RR42_RS01585 0.57 +0.1
359,320 - RR42_RS01585 0.57 +0.8
359,406 + RR42_RS01585 0.63 +1.7
359,868 + -0.4
359,868 + +0.1
359,869 - -0.0
359,869 - -1.1
360,037 + +1.3
360,113 + RR42_RS01590 0.13 -0.0
360,114 - RR42_RS01590 0.13 -0.5
360,151 + RR42_RS01590 0.16 +0.1
360,151 + RR42_RS01590 0.16 +0.0
360,232 + RR42_RS01590 0.22 -0.2
360,232 + RR42_RS01590 0.22 +0.3
360,232 + RR42_RS01590 0.22 -2.4
360,232 + RR42_RS01590 0.22 +0.2
360,233 - RR42_RS01590 0.22 -1.4
360,358 + RR42_RS01590 0.31 +0.1
360,407 - RR42_RS01590 0.34 -0.6
360,407 - RR42_RS01590 0.34 -1.0
360,452 - RR42_RS01590 0.37 -1.6
360,452 - RR42_RS01590 0.37 -0.4
360,452 - RR42_RS01590 0.37 -1.8
360,476 + RR42_RS01590 0.39 -0.1
360,477 - RR42_RS01590 0.39 -0.6
360,477 - RR42_RS01590 0.39 -0.6
360,710 - RR42_RS01590 0.56 +0.7
360,712 + RR42_RS01590 0.56 -0.8
360,737 + RR42_RS01590 0.57 -0.5
360,892 + RR42_RS01590 0.69 -0.0

Or see this region's nucleotide sequence