Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01500 and RR42_RS01505 are separated by 149 nucleotides RR42_RS01505 and RR42_RS01510 are separated by 258 nucleotides RR42_RS01510 and RR42_RS01515 are separated by 85 nucleotides
RR42_RS01500: RR42_RS01500 - hypothetical protein, at 339,675 to 340,094
_RS01500
RR42_RS01505: RR42_RS01505 - tRNA-Cys, at 340,244 to 340,318
_RS01505
RR42_RS01510: RR42_RS01510 - N-acetylglutamate synthase, at 340,577 to 341,020
_RS01510
RR42_RS01515: RR42_RS01515 - cytidyltransferase, at 341,106 to 342,152
_RS01515
Position (kb) 340
341
342 Strain fitness (log2 ratio) -1
0
1 at 339.633 kb on + strand at 339.642 kb on + strand at 339.912 kb on + strand, within RR42_RS01500 at 339.912 kb on + strand, within RR42_RS01500 at 339.913 kb on - strand, within RR42_RS01500 at 339.913 kb on - strand, within RR42_RS01500 at 340.161 kb on + strand at 340.162 kb on - strand at 340.162 kb on - strand at 340.285 kb on + strand, within RR42_RS01505 at 340.321 kb on - strand at 340.321 kb on - strand at 340.422 kb on - strand at 340.509 kb on + strand at 340.510 kb on - strand at 340.510 kb on - strand at 340.510 kb on - strand at 340.570 kb on - strand at 340.696 kb on + strand, within RR42_RS01510 at 340.697 kb on - strand, within RR42_RS01510 at 340.697 kb on - strand, within RR42_RS01510 at 340.697 kb on - strand, within RR42_RS01510 at 340.780 kb on - strand, within RR42_RS01510 at 340.817 kb on - strand, within RR42_RS01510 at 340.817 kb on - strand, within RR42_RS01510 at 340.896 kb on - strand, within RR42_RS01510 at 340.896 kb on - strand, within RR42_RS01510 at 341.113 kb on - strand at 341.113 kb on - strand at 341.114 kb on + strand at 341.334 kb on + strand, within RR42_RS01515 at 341.335 kb on - strand, within RR42_RS01515 at 341.335 kb on - strand, within RR42_RS01515 at 341.337 kb on + strand, within RR42_RS01515 at 341.338 kb on - strand, within RR42_RS01515 at 341.458 kb on - strand, within RR42_RS01515 at 341.652 kb on + strand, within RR42_RS01515
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 339,633 + -0.2 339,642 + +0.6 339,912 + RR42_RS01500 0.56 +1.1 339,912 + RR42_RS01500 0.56 -1.0 339,913 - RR42_RS01500 0.57 +1.4 339,913 - RR42_RS01500 0.57 +0.0 340,161 + +0.6 340,162 - -0.1 340,162 - +0.5 340,285 + RR42_RS01505 0.55 -0.5 340,321 - -0.2 340,321 - +0.0 340,422 - -0.8 340,509 + +0.3 340,510 - +0.1 340,510 - -0.1 340,510 - -0.8 340,570 - +0.1 340,696 + RR42_RS01510 0.27 -0.3 340,697 - RR42_RS01510 0.27 +0.0 340,697 - RR42_RS01510 0.27 -0.3 340,697 - RR42_RS01510 0.27 +0.9 340,780 - RR42_RS01510 0.46 -0.1 340,817 - RR42_RS01510 0.54 +0.0 340,817 - RR42_RS01510 0.54 +0.5 340,896 - RR42_RS01510 0.72 -0.1 340,896 - RR42_RS01510 0.72 -0.4 341,113 - +0.6 341,113 - -0.1 341,114 + +0.1 341,334 + RR42_RS01515 0.22 -0.2 341,335 - RR42_RS01515 0.22 +0.2 341,335 - RR42_RS01515 0.22 -0.7 341,337 + RR42_RS01515 0.22 +0.5 341,338 - RR42_RS01515 0.22 +0.4 341,458 - RR42_RS01515 0.34 -0.7 341,652 + RR42_RS01515 0.52 -0.5
Or see this region's nucleotide sequence