Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01285 and RR42_RS01290 are separated by 461 nucleotides RR42_RS01290 and RR42_RS01295 are separated by 141 nucleotides
RR42_RS01285: RR42_RS01285 - acyl-CoA dehydrogenase, at 291,749 to 293,410
_RS01285
RR42_RS01290: RR42_RS01290 - thiamine biosynthesis protein ThiC, at 293,872 to 295,758
_RS01290
RR42_RS01295: RR42_RS01295 - cytochrome C biogenesis protein CcdA, at 295,900 to 297,078
_RS01295
Position (kb) 293
294
295
296 Strain fitness (log2 ratio) -1
0
1
2 at 293.197 kb on + strand, within RR42_RS01285 at 293.197 kb on + strand, within RR42_RS01285 at 293.197 kb on + strand, within RR42_RS01285 at 293.198 kb on - strand, within RR42_RS01285 at 293.198 kb on - strand, within RR42_RS01285 at 293.277 kb on - strand at 293.485 kb on + strand at 293.485 kb on + strand at 293.486 kb on - strand at 293.527 kb on - strand at 293.527 kb on - strand at 293.593 kb on + strand at 293.594 kb on - strand at 293.594 kb on - strand at 293.594 kb on - strand at 294.340 kb on + strand, within RR42_RS01290 at 294.340 kb on + strand, within RR42_RS01290 at 294.394 kb on + strand, within RR42_RS01290 at 294.760 kb on + strand, within RR42_RS01290 at 294.856 kb on + strand, within RR42_RS01290 at 294.856 kb on + strand, within RR42_RS01290 at 294.889 kb on + strand, within RR42_RS01290 at 294.889 kb on + strand, within RR42_RS01290 at 295.209 kb on + strand, within RR42_RS01290 at 295.234 kb on + strand, within RR42_RS01290 at 295.234 kb on + strand, within RR42_RS01290 at 295.564 kb on + strand, within RR42_RS01290 at 295.750 kb on + strand at 295.750 kb on + strand at 295.756 kb on + strand at 295.763 kb on + strand at 295.808 kb on + strand at 295.844 kb on + strand at 295.844 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 293,197 + RR42_RS01285 0.87 +0.3 293,197 + RR42_RS01285 0.87 -0.2 293,197 + RR42_RS01285 0.87 -0.8 293,198 - RR42_RS01285 0.87 -0.1 293,198 - RR42_RS01285 0.87 -1.2 293,277 - -0.6 293,485 + +0.7 293,485 + +0.5 293,486 - +0.9 293,527 - +0.7 293,527 - +0.1 293,593 + +0.2 293,594 - -0.3 293,594 - +0.2 293,594 - -0.1 294,340 + RR42_RS01290 0.25 +0.0 294,340 + RR42_RS01290 0.25 +0.8 294,394 + RR42_RS01290 0.28 +0.5 294,760 + RR42_RS01290 0.47 +0.5 294,856 + RR42_RS01290 0.52 +0.0 294,856 + RR42_RS01290 0.52 +1.9 294,889 + RR42_RS01290 0.54 +0.5 294,889 + RR42_RS01290 0.54 +0.8 295,209 + RR42_RS01290 0.71 -0.4 295,234 + RR42_RS01290 0.72 +0.2 295,234 + RR42_RS01290 0.72 +0.0 295,564 + RR42_RS01290 0.90 +0.2 295,750 + +0.1 295,750 + -0.2 295,756 + -0.7 295,763 + -0.4 295,808 + -0.8 295,844 + +0.6 295,844 + +1.3
Or see this region's nucleotide sequence