Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_831 and Pf1N1B4_832 are separated by 254 nucleotides Pf1N1B4_832 and Pf1N1B4_833 are separated by 2 nucleotides
Pf1N1B4_831 - hypothetical protein, at 952,481 to 952,804
_831
Pf1N1B4_832 - hypothetical protein, at 953,059 to 953,349
_832
Pf1N1B4_833 - PTS system, glucose-specific IIA component / Phosphotransferase system, phosphocarrier protein HPr / Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 953,352 to 955,886
_833
Position (kb) 953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 952.061 kb on + strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.084 kb on - strand at 952.084 kb on - strand at 952.139 kb on + strand at 952.140 kb on - strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.285 kb on + strand at 952.285 kb on + strand at 952.286 kb on - strand at 952.340 kb on - strand at 952.340 kb on - strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.420 kb on - strand at 952.420 kb on - strand at 952.439 kb on - strand at 952.453 kb on + strand at 952.453 kb on + strand at 952.453 kb on + strand at 952.454 kb on - strand at 952.466 kb on - strand at 952.466 kb on - strand at 952.466 kb on - strand at 952.476 kb on + strand at 952.477 kb on - strand at 952.610 kb on - strand, within Pf1N1B4_831 at 952.802 kb on + strand at 953.595 kb on + strand at 953.596 kb on - strand at 953.723 kb on - strand, within Pf1N1B4_833 at 953.802 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.136 kb on + strand, within Pf1N1B4_833 at 954.137 kb on - strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.185 kb on - strand, within Pf1N1B4_833 at 954.185 kb on - strand, within Pf1N1B4_833 at 954.332 kb on - strand, within Pf1N1B4_833 at 954.332 kb on - strand, within Pf1N1B4_833
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 952,061 + -0.3 952,062 - -2.5 952,062 - -1.0 952,062 - +0.8 952,062 - +0.0 952,084 - -0.2 952,084 - -0.3 952,139 + -0.5 952,140 - -1.0 952,268 + -0.5 952,268 + +0.2 952,268 + +2.9 952,268 + +0.6 952,285 + -0.2 952,285 + -2.1 952,286 - +0.8 952,340 - +1.6 952,340 - -1.0 952,419 + -0.5 952,419 + +0.0 952,419 + +1.4 952,419 + -1.0 952,420 - +0.0 952,420 - -0.5 952,439 - -1.0 952,453 + +0.0 952,453 + -1.3 952,453 + +0.5 952,454 - +0.0 952,466 - +0.6 952,466 - -0.1 952,466 - +1.6 952,476 + +0.0 952,477 - -1.5 952,610 - Pf1N1B4_831 0.40 +1.0 952,802 + +1.2 953,595 + +0.4 953,596 - +1.0 953,723 - Pf1N1B4_833 0.15 -1.8 953,802 + Pf1N1B4_833 0.18 +1.0 954,052 + Pf1N1B4_833 0.28 -1.0 954,052 + Pf1N1B4_833 0.28 -1.0 954,052 + Pf1N1B4_833 0.28 +0.0 954,052 + Pf1N1B4_833 0.28 -0.5 954,052 + Pf1N1B4_833 0.28 +1.0 954,052 + Pf1N1B4_833 0.28 -1.2 954,052 + Pf1N1B4_833 0.28 +1.0 954,053 - Pf1N1B4_833 0.28 -0.2 954,053 - Pf1N1B4_833 0.28 -2.1 954,053 - Pf1N1B4_833 0.28 +0.5 954,053 - Pf1N1B4_833 0.28 -1.4 954,053 - Pf1N1B4_833 0.28 +0.0 954,136 + Pf1N1B4_833 0.31 -1.5 954,137 - Pf1N1B4_833 0.31 -1.7 954,184 + Pf1N1B4_833 0.33 -0.4 954,184 + Pf1N1B4_833 0.33 -1.3 954,184 + Pf1N1B4_833 0.33 +0.0 954,184 + Pf1N1B4_833 0.33 +0.0 954,185 - Pf1N1B4_833 0.33 -3.0 954,185 - Pf1N1B4_833 0.33 +0.0 954,332 - Pf1N1B4_833 0.39 +0.0 954,332 - Pf1N1B4_833 0.39 +2.0
Or see this region's nucleotide sequence