Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5507

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5504 and Pf1N1B4_5505 are separated by 38 nucleotidesPf1N1B4_5505 and Pf1N1B4_5506 overlap by 10 nucleotidesPf1N1B4_5506 and Pf1N1B4_5507 are separated by 48 nucleotides Pf1N1B4_5504 - hypothetical protein, at 254,478 to 255,089 _5504 Pf1N1B4_5505 - hypothetical protein, at 255,128 to 255,304 _5505 Pf1N1B4_5506 - hypothetical protein, at 255,295 to 255,819 _5506 Pf1N1B4_5507 - hypothetical protein, at 255,868 to 256,542 _5507 Position (kb) 255 256 257Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 254.893 kb on + strand, within Pf1N1B4_5504at 254.894 kb on - strand, within Pf1N1B4_5504at 254.894 kb on - strand, within Pf1N1B4_5504at 255.054 kb on + strandat 255.055 kb on - strandat 255.066 kb on + strandat 255.067 kb on - strandat 255.067 kb on - strandat 255.131 kb on + strandat 255.131 kb on + strandat 255.131 kb on + strandat 255.131 kb on + strandat 255.131 kb on + strandat 255.131 kb on + strandat 255.131 kb on + strandat 255.132 kb on - strandat 255.132 kb on - strandat 255.132 kb on - strandat 255.132 kb on - strandat 255.132 kb on - strandat 255.132 kb on - strandat 255.132 kb on - strandat 255.242 kb on + strand, within Pf1N1B4_5505at 255.242 kb on + strand, within Pf1N1B4_5505at 255.242 kb on + strandat 255.242 kb on + strand, within Pf1N1B4_5505at 255.242 kb on + strand, within Pf1N1B4_5505at 255.242 kb on + strandat 255.242 kb on + strand, within Pf1N1B4_5505at 255.242 kb on + strand, within Pf1N1B4_5505at 255.242 kb on + strand, within Pf1N1B4_5505at 255.243 kb on - strand, within Pf1N1B4_5505at 255.243 kb on - strandat 255.269 kb on + strandat 255.269 kb on + strandat 255.269 kb on + strand, within Pf1N1B4_5505at 255.269 kb on + strand, within Pf1N1B4_5505at 255.270 kb on - strand, within Pf1N1B4_5505at 255.270 kb on - strand, within Pf1N1B4_5505at 255.289 kb on + strandat 255.592 kb on + strand, within Pf1N1B4_5506at 255.592 kb on + strand, within Pf1N1B4_5506at 255.592 kb on + strand, within Pf1N1B4_5506at 255.592 kb on + strand, within Pf1N1B4_5506at 255.592 kb on + strandat 255.592 kb on + strand, within Pf1N1B4_5506at 255.593 kb on - strand, within Pf1N1B4_5506at 255.593 kb on - strand, within Pf1N1B4_5506at 255.593 kb on - strandat 255.593 kb on - strandat 255.689 kb on + strand, within Pf1N1B4_5506at 255.689 kb on + strand, within Pf1N1B4_5506at 255.689 kb on + strand, within Pf1N1B4_5506at 255.689 kb on + strand, within Pf1N1B4_5506at 255.691 kb on + strandat 255.692 kb on - strand, within Pf1N1B4_5506at 255.740 kb on + strand, within Pf1N1B4_5506at 255.741 kb on - strand, within Pf1N1B4_5506at 255.741 kb on - strand, within Pf1N1B4_5506at 255.829 kb on + strandat 255.829 kb on + strandat 255.829 kb on + strandat 255.830 kb on - strandat 255.881 kb on + strandat 255.881 kb on + strandat 255.881 kb on + strandat 255.882 kb on - strandat 255.932 kb on + strandat 255.933 kb on - strandat 255.933 kb on - strandat 255.933 kb on - strandat 255.933 kb on - strandat 255.933 kb on - strandat 255.933 kb on - strandat 256.353 kb on - strand, within Pf1N1B4_5507at 256.405 kb on + strand, within Pf1N1B4_5507at 256.405 kb on + strand, within Pf1N1B4_5507at 256.406 kb on - strand, within Pf1N1B4_5507at 256.490 kb on + strandat 256.491 kb on - strandat 256.491 kb on - strandat 256.662 kb on + strandat 256.662 kb on + strandat 256.680 kb on - strandat 256.720 kb on + strandat 256.720 kb on + strandat 256.721 kb on - strandat 256.851 kb on + strandat 256.851 kb on + strandat 256.851 kb on + strandat 256.851 kb on + strandat 256.851 kb on + strandat 256.851 kb on + strandat 256.851 kb on + strandat 256.851 kb on + strandat 256.851 kb on + strandat 256.851 kb on + strandat 256.851 kb on + strandat 256.852 kb on - strandat 256.852 kb on - strandat 256.852 kb on - strandat 256.852 kb on - strandat 256.852 kb on - strandat 256.956 kb on + strandat 256.956 kb on + strandat 256.956 kb on + strandat 256.956 kb on + strandat 256.990 kb on + strandat 256.990 kb on + strandat 256.990 kb on + strandat 256.991 kb on - strandat 257.022 kb on + strandat 257.048 kb on + strandat 257.048 kb on + strandat 257.094 kb on + strandat 257.095 kb on - strandat 257.095 kb on - strandat 257.095 kb on - strandat 257.134 kb on + strandat 257.134 kb on + strandat 257.134 kb on + strandat 257.134 kb on + strandat 257.135 kb on - strandat 257.135 kb on - strandat 257.135 kb on - strandat 257.135 kb on - strandat 257.135 kb on - strandat 257.135 kb on - strandat 257.135 kb on - strandat 257.156 kb on - strandat 257.177 kb on - strandat 257.186 kb on - strandat 257.231 kb on - strandat 257.304 kb on - strandat 257.372 kb on + strandat 257.372 kb on + strandat 257.373 kb on - strandat 257.373 kb on - strandat 257.373 kb on - strandat 257.373 kb on - strandat 257.373 kb on - strandat 257.373 kb on - strandat 257.373 kb on - strandat 257.389 kb on - strandat 257.389 kb on - strandat 257.389 kb on - strandat 257.421 kb on + strandat 257.422 kb on - strandat 257.422 kb on - strandat 257.466 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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254,893 + Pf1N1B4_5504 0.68 -1.0
254,894 - Pf1N1B4_5504 0.68 +2.0
254,894 - Pf1N1B4_5504 0.68 -1.0
255,054 + +1.4
255,055 - -2.3
255,066 + -2.5
255,067 - +0.6
255,067 - -0.4
255,131 + +2.0
255,131 + +0.0
255,131 + -0.9
255,131 + -0.1
255,131 + -0.7
255,131 + -2.3
255,131 + +1.0
255,132 - +2.0
255,132 - -0.7
255,132 - -0.7
255,132 - +0.0
255,132 - -2.3
255,132 - +0.0
255,132 - -0.3
255,242 + Pf1N1B4_5505 0.64 -0.5
255,242 + Pf1N1B4_5505 0.64 -0.5
255,242 + -1.0
255,242 + Pf1N1B4_5505 0.64 -1.5
255,242 + Pf1N1B4_5505 0.64 -2.5
255,242 + +2.4
255,242 + Pf1N1B4_5505 0.64 +1.0
255,242 + Pf1N1B4_5505 0.64 +0.0
255,242 + Pf1N1B4_5505 0.64 -0.5
255,243 - Pf1N1B4_5505 0.65 -2.1
255,243 - +1.0
255,269 + +0.0
255,269 + +0.8
255,269 + Pf1N1B4_5505 0.80 -0.7
255,269 + Pf1N1B4_5505 0.80 +0.0
255,270 - Pf1N1B4_5505 0.80 +0.0
255,270 - Pf1N1B4_5505 0.80 +0.5
255,289 + -1.5
255,592 + Pf1N1B4_5506 0.57 -0.4
255,592 + Pf1N1B4_5506 0.57 +1.4
255,592 + Pf1N1B4_5506 0.57 -2.0
255,592 + Pf1N1B4_5506 0.57 +0.0
255,592 + +0.6
255,592 + Pf1N1B4_5506 0.57 -1.5
255,593 - Pf1N1B4_5506 0.57 +0.6
255,593 - Pf1N1B4_5506 0.57 -2.3
255,593 - +1.0
255,593 - +0.0
255,689 + Pf1N1B4_5506 0.75 +1.0
255,689 + Pf1N1B4_5506 0.75 -0.5
255,689 + Pf1N1B4_5506 0.75 +1.6
255,689 + Pf1N1B4_5506 0.75 -2.3
255,691 + -2.3
255,692 - Pf1N1B4_5506 0.76 -0.5
255,740 + Pf1N1B4_5506 0.85 -2.0
255,741 - Pf1N1B4_5506 0.85 +0.7
255,741 - Pf1N1B4_5506 0.85 -2.4
255,829 + -2.3
255,829 + +0.0
255,829 + -2.3
255,830 - -1.0
255,881 + +1.0
255,881 + +0.0
255,881 + +0.0
255,882 - +0.0
255,932 + +2.0
255,933 - +0.3
255,933 - -1.0
255,933 - +0.3
255,933 - -2.3
255,933 - -0.3
255,933 - +0.4
256,353 - Pf1N1B4_5507 0.72 -1.1
256,405 + Pf1N1B4_5507 0.80 -0.4
256,405 + Pf1N1B4_5507 0.80 -1.5
256,406 - Pf1N1B4_5507 0.80 -2.5
256,490 + +0.0
256,491 - -0.5
256,491 - -0.5
256,662 + +0.5
256,662 + +0.5
256,680 - +0.8
256,720 + -1.3
256,720 + +1.0
256,721 - -0.4
256,851 + +0.0
256,851 + +0.0
256,851 + -1.0
256,851 + +0.6
256,851 + +0.4
256,851 + +0.8
256,851 + +0.6
256,851 + -2.0
256,851 + +1.6
256,851 + +1.4
256,851 + +1.0
256,852 - +1.0
256,852 - +1.0
256,852 - +0.8
256,852 - +0.3
256,852 - -1.0
256,956 + -0.5
256,956 + +1.0
256,956 + +0.0
256,956 + -0.6
256,990 + -0.5
256,990 + -0.5
256,990 + -1.5
256,991 - -0.7
257,022 + -3.1
257,048 + -0.5
257,048 + +1.0
257,094 + +0.6
257,095 - -0.5
257,095 - -2.3
257,095 - +0.5
257,134 + +0.7
257,134 + +1.0
257,134 + +0.6
257,134 + -1.0
257,135 - +1.0
257,135 - +0.0
257,135 - +0.0
257,135 - -2.0
257,135 - +0.4
257,135 - -0.8
257,135 - -0.5
257,156 - +1.2
257,177 - -1.0
257,186 - -0.7
257,231 - -1.0
257,304 - -1.0
257,372 + +0.0
257,372 + +0.6
257,373 - -1.0
257,373 - -2.3
257,373 - +0.0
257,373 - +0.0
257,373 - +0.5
257,373 - -0.4
257,373 - +0.0
257,389 - +0.4
257,389 - -0.7
257,389 - +0.6
257,421 + +0.5
257,422 - -0.5
257,422 - +0.0
257,466 + -1.0

Or see this region's nucleotide sequence