Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06484

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06483 and H281DRAFT_06484 are separated by 279 nucleotidesH281DRAFT_06484 and H281DRAFT_06485 are separated by 336 nucleotides H281DRAFT_06483: H281DRAFT_06483 - succinylglutamate desuccinylase, at 21,072 to 22,124 _06483 H281DRAFT_06484: H281DRAFT_06484 - amino acid ABC transporter substrate-binding protein, PAAT family, at 22,404 to 23,204 _06484 H281DRAFT_06485: H281DRAFT_06485 - c-di-GMP-related signal transduction protein, contains EAL and HDOD domains, at 23,541 to 24,920 _06485 Position (kb) 22 23 24Strain fitness (log2 ratio) -1 0 1at 21.475 kb on - strand, within H281DRAFT_06483at 21.707 kb on + strand, within H281DRAFT_06483at 21.707 kb on + strand, within H281DRAFT_06483at 21.708 kb on - strand, within H281DRAFT_06483at 22.122 kb on + strandat 22.162 kb on + strandat 22.389 kb on - strandat 22.860 kb on + strand, within H281DRAFT_06484at 22.860 kb on + strand, within H281DRAFT_06484at 23.176 kb on - strandat 23.176 kb on - strandat 23.345 kb on + strandat 23.379 kb on - strandat 23.461 kb on + strandat 23.461 kb on + strandat 23.461 kb on + strandat 23.461 kb on + strandat 23.461 kb on + strandat 23.462 kb on - strandat 23.462 kb on - strandat 23.856 kb on + strand, within H281DRAFT_06485at 23.857 kb on - strand, within H281DRAFT_06485at 23.943 kb on - strand, within H281DRAFT_06485

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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21,475 - H281DRAFT_06483 0.38 -1.6
21,707 + H281DRAFT_06483 0.60 +0.5
21,707 + H281DRAFT_06483 0.60 -0.4
21,708 - H281DRAFT_06483 0.60 -0.9
22,122 + -0.7
22,162 + -0.4
22,389 - +0.7
22,860 + H281DRAFT_06484 0.57 -0.4
22,860 + H281DRAFT_06484 0.57 +0.1
23,176 - +1.1
23,176 - +0.0
23,345 + +1.4
23,379 - -1.0
23,461 + -0.5
23,461 + +0.5
23,461 + -0.4
23,461 + -1.1
23,461 + +0.2
23,462 - +1.5
23,462 - -0.1
23,856 + H281DRAFT_06485 0.23 +0.8
23,857 - H281DRAFT_06485 0.23 -1.0
23,943 - H281DRAFT_06485 0.29 -0.3

Or see this region's nucleotide sequence