Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06449

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06449 and H281DRAFT_06450 are separated by 39 nucleotides H281DRAFT_06449: H281DRAFT_06449 - hypothetical protein, at 55,416 to 55,631 _06449 H281DRAFT_06450: H281DRAFT_06450 - ATP-dependent Clp protease ATP-binding subunit ClpC, at 55,671 to 58,448 _06450 Position (kb) 55 56Strain fitness (log2 ratio) -1 0 1 2at 54.431 kb on + strandat 54.431 kb on + strandat 54.432 kb on - strandat 54.441 kb on + strandat 54.613 kb on - strandat 54.756 kb on - strandat 54.784 kb on + strandat 54.784 kb on + strandat 54.785 kb on - strandat 54.817 kb on + strandat 54.817 kb on + strandat 55.168 kb on + strandat 55.215 kb on + strandat 55.215 kb on + strandat 55.216 kb on - strandat 55.300 kb on - strandat 55.331 kb on + strandat 55.374 kb on + strandat 55.380 kb on - strandat 55.415 kb on + strandat 55.447 kb on - strand, within H281DRAFT_06449at 55.447 kb on - strand, within H281DRAFT_06449at 55.550 kb on + strand, within H281DRAFT_06449at 55.550 kb on + strand, within H281DRAFT_06449at 55.550 kb on + strand, within H281DRAFT_06449at 55.550 kb on + strand, within H281DRAFT_06449at 55.550 kb on + strand, within H281DRAFT_06449at 55.551 kb on - strand, within H281DRAFT_06449at 55.632 kb on + strandat 55.651 kb on + strandat 55.651 kb on + strandat 55.652 kb on - strandat 55.672 kb on + strandat 55.672 kb on + strandat 55.814 kb on - strandat 56.293 kb on - strand, within H281DRAFT_06450at 56.305 kb on - strand, within H281DRAFT_06450at 56.360 kb on - strand, within H281DRAFT_06450at 56.414 kb on - strand, within H281DRAFT_06450at 56.613 kb on + strand, within H281DRAFT_06450

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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54,431 + +2.1
54,431 + -0.3
54,432 - -0.7
54,441 + +0.8
54,613 - +0.2
54,756 - -0.2
54,784 + -0.3
54,784 + +0.4
54,785 - +0.5
54,817 + +0.4
54,817 + -0.3
55,168 + +0.3
55,215 + +0.3
55,215 + +0.2
55,216 - +0.5
55,300 - +0.3
55,331 + -1.2
55,374 + -1.7
55,380 - +0.4
55,415 + -0.1
55,447 - H281DRAFT_06449 0.14 -0.1
55,447 - H281DRAFT_06449 0.14 -0.8
55,550 + H281DRAFT_06449 0.62 +0.8
55,550 + H281DRAFT_06449 0.62 +0.7
55,550 + H281DRAFT_06449 0.62 +0.3
55,550 + H281DRAFT_06449 0.62 -0.7
55,550 + H281DRAFT_06449 0.62 +1.1
55,551 - H281DRAFT_06449 0.62 -0.2
55,632 + +0.3
55,651 + -0.2
55,651 + +0.1
55,652 - +1.1
55,672 + +0.5
55,672 + -0.4
55,814 - -0.1
56,293 - H281DRAFT_06450 0.22 +0.7
56,305 - H281DRAFT_06450 0.23 +1.7
56,360 - H281DRAFT_06450 0.25 +0.3
56,414 - H281DRAFT_06450 0.27 +0.1
56,613 + H281DRAFT_06450 0.34 +0.0

Or see this region's nucleotide sequence