Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05674

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05672 and H281DRAFT_05673 are separated by 70 nucleotidesH281DRAFT_05673 and H281DRAFT_05674 are separated by 19 nucleotidesH281DRAFT_05674 and H281DRAFT_05675 are separated by 368 nucleotides H281DRAFT_05672: H281DRAFT_05672 - RNA polymerase-associated protein, at 89,441 to 90,052 _05672 H281DRAFT_05673: H281DRAFT_05673 - stringent starvation protein B, at 90,123 to 90,641 _05673 H281DRAFT_05674: H281DRAFT_05674 - tRNA_Thr_TGT, at 90,661 to 90,736 _05674 H281DRAFT_05675: H281DRAFT_05675 - Methylase of polypeptide chain release factors, at 91,105 to 92,232 _05675 Position (kb) 90 91Strain fitness (log2 ratio) -1 0 1 2 3at 90.165 kb on + strandat 90.166 kb on - strandat 90.189 kb on + strand, within H281DRAFT_05673at 90.189 kb on + strand, within H281DRAFT_05673at 90.288 kb on - strand, within H281DRAFT_05673at 90.288 kb on - strand, within H281DRAFT_05673at 90.378 kb on - strand, within H281DRAFT_05673at 90.390 kb on + strand, within H281DRAFT_05673at 90.390 kb on + strand, within H281DRAFT_05673at 90.391 kb on - strand, within H281DRAFT_05673at 90.391 kb on - strand, within H281DRAFT_05673at 90.391 kb on - strand, within H281DRAFT_05673at 90.614 kb on + strandat 90.634 kb on + strandat 90.634 kb on + strandat 90.645 kb on - strandat 90.738 kb on + strandat 90.738 kb on + strandat 90.738 kb on + strandat 90.738 kb on + strandat 90.739 kb on - strandat 90.886 kb on + strandat 90.938 kb on + strandat 90.939 kb on - strandat 90.950 kb on + strandat 90.950 kb on + strandat 90.950 kb on + strandat 90.951 kb on - strandat 90.951 kb on - strandat 90.981 kb on - strandat 90.981 kb on - strandat 90.983 kb on + strandat 90.984 kb on - strandat 90.984 kb on - strandat 91.070 kb on + strandat 91.070 kb on + strandat 91.237 kb on + strand, within H281DRAFT_05675at 91.444 kb on + strand, within H281DRAFT_05675at 91.445 kb on - strand, within H281DRAFT_05675at 91.498 kb on + strand, within H281DRAFT_05675at 91.499 kb on - strand, within H281DRAFT_05675at 91.499 kb on - strand, within H281DRAFT_05675at 91.622 kb on - strand, within H281DRAFT_05675at 91.622 kb on - strand, within H281DRAFT_05675at 91.654 kb on + strand, within H281DRAFT_05675at 91.654 kb on + strand, within H281DRAFT_05675at 91.655 kb on - strand, within H281DRAFT_05675at 91.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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90,165 + -0.3
90,166 - -0.3
90,189 + H281DRAFT_05673 0.13 -0.2
90,189 + H281DRAFT_05673 0.13 -0.8
90,288 - H281DRAFT_05673 0.32 +0.0
90,288 - H281DRAFT_05673 0.32 +0.9
90,378 - H281DRAFT_05673 0.49 +0.6
90,390 + H281DRAFT_05673 0.51 +0.5
90,390 + H281DRAFT_05673 0.51 -0.2
90,391 - H281DRAFT_05673 0.52 +0.6
90,391 - H281DRAFT_05673 0.52 +0.4
90,391 - H281DRAFT_05673 0.52 +1.4
90,614 + +0.2
90,634 + -0.6
90,634 + -0.5
90,645 - +0.2
90,738 + -1.2
90,738 + +0.7
90,738 + -0.4
90,738 + +1.9
90,739 - -0.3
90,886 + -0.4
90,938 + -0.9
90,939 - +0.4
90,950 + +0.2
90,950 + +0.3
90,950 + +0.0
90,951 - -0.5
90,951 - -0.6
90,981 - -1.2
90,981 - +0.7
90,983 + +0.3
90,984 - +1.6
90,984 - +0.4
91,070 + -0.5
91,070 + +0.2
91,237 + H281DRAFT_05675 0.12 +0.2
91,444 + H281DRAFT_05675 0.30 -0.4
91,445 - H281DRAFT_05675 0.30 -0.9
91,498 + H281DRAFT_05675 0.35 +3.5
91,499 - H281DRAFT_05675 0.35 -0.1
91,499 - H281DRAFT_05675 0.35 +0.1
91,622 - H281DRAFT_05675 0.46 -0.3
91,622 - H281DRAFT_05675 0.46 +0.2
91,654 + H281DRAFT_05675 0.49 +0.0
91,654 + H281DRAFT_05675 0.49 +0.5
91,655 - H281DRAFT_05675 0.49 -1.3
91,655 - +2.8

Or see this region's nucleotide sequence