Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04931

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04930 and H281DRAFT_04931 are separated by 100 nucleotidesH281DRAFT_04931 and H281DRAFT_04932 are separated by 18 nucleotidesH281DRAFT_04932 and H281DRAFT_04933 are separated by 302 nucleotides H281DRAFT_04930: H281DRAFT_04930 - Cupin domain, at 112,380 to 113,816 _04930 H281DRAFT_04931: H281DRAFT_04931 - Surfactin synthase thioesterase subunit, at 113,917 to 114,735 _04931 H281DRAFT_04932: H281DRAFT_04932 - MbtH protein, at 114,754 to 114,987 _04932 H281DRAFT_04933: H281DRAFT_04933 - Nitroreductase, at 115,290 to 115,913 _04933 Position (kb) 113 114 115Strain fitness (log2 ratio) -1 0 1 2at 113.042 kb on - strand, within H281DRAFT_04930at 113.077 kb on + strand, within H281DRAFT_04930at 113.325 kb on - strand, within H281DRAFT_04930at 113.431 kb on + strand, within H281DRAFT_04930at 113.431 kb on + strand, within H281DRAFT_04930at 113.475 kb on - strand, within H281DRAFT_04930at 113.555 kb on - strand, within H281DRAFT_04930at 113.756 kb on - strandat 114.089 kb on - strand, within H281DRAFT_04931at 114.201 kb on + strand, within H281DRAFT_04931at 114.201 kb on + strand, within H281DRAFT_04931at 114.822 kb on + strand, within H281DRAFT_04932at 114.911 kb on + strand, within H281DRAFT_04932at 114.930 kb on - strand, within H281DRAFT_04932at 114.946 kb on + strand, within H281DRAFT_04932at 115.009 kb on + strandat 115.009 kb on + strandat 115.010 kb on - strandat 115.191 kb on + strandat 115.192 kb on - strandat 115.281 kb on + strandat 115.295 kb on + strandat 115.295 kb on + strandat 115.295 kb on + strandat 115.295 kb on + strandat 115.296 kb on - strandat 115.296 kb on - strandat 115.296 kb on - strandat 115.417 kb on + strand, within H281DRAFT_04933

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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113,042 - H281DRAFT_04930 0.46 -0.1
113,077 + H281DRAFT_04930 0.49 +0.5
113,325 - H281DRAFT_04930 0.66 -1.6
113,431 + H281DRAFT_04930 0.73 +1.1
113,431 + H281DRAFT_04930 0.73 +0.1
113,475 - H281DRAFT_04930 0.76 +0.1
113,555 - H281DRAFT_04930 0.82 +0.1
113,756 - -0.5
114,089 - H281DRAFT_04931 0.21 +1.1
114,201 + H281DRAFT_04931 0.35 -1.3
114,201 + H281DRAFT_04931 0.35 +2.7
114,822 + H281DRAFT_04932 0.29 +1.9
114,911 + H281DRAFT_04932 0.67 +1.2
114,930 - H281DRAFT_04932 0.75 -0.1
114,946 + H281DRAFT_04932 0.82 +0.1
115,009 + +1.8
115,009 + +1.0
115,010 - +0.7
115,191 + -0.7
115,192 - +2.1
115,281 + +0.3
115,295 + -0.3
115,295 + +1.3
115,295 + -0.2
115,295 + -0.3
115,296 - -0.5
115,296 - -1.7
115,296 - -1.0
115,417 + H281DRAFT_04933 0.20 -1.0

Or see this region's nucleotide sequence