Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04402

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04401 and H281DRAFT_04402 are separated by 457 nucleotidesH281DRAFT_04402 and H281DRAFT_04403 are separated by 96 nucleotides H281DRAFT_04401: H281DRAFT_04401 - Cyanate permease, at 116,499 to 117,737 _04401 H281DRAFT_04402: H281DRAFT_04402 - carbamoyl-phosphate synthase small subunit, at 118,195 to 119,349 _04402 H281DRAFT_04403: H281DRAFT_04403 - carbamoyl-phosphate synthase large subunit, at 119,446 to 122,700 _04403 Position (kb) 118 119 120Strain fitness (log2 ratio) -1 0 1 2at 117.336 kb on + strand, within H281DRAFT_04401at 117.366 kb on + strand, within H281DRAFT_04401at 117.366 kb on + strand, within H281DRAFT_04401at 117.367 kb on - strand, within H281DRAFT_04401at 117.367 kb on - strand, within H281DRAFT_04401at 117.367 kb on - strand, within H281DRAFT_04401at 117.433 kb on - strand, within H281DRAFT_04401at 117.433 kb on - strand, within H281DRAFT_04401at 117.465 kb on + strand, within H281DRAFT_04401at 117.465 kb on + strand, within H281DRAFT_04401at 117.465 kb on + strand, within H281DRAFT_04401at 117.466 kb on - strand, within H281DRAFT_04401at 117.678 kb on + strandat 117.679 kb on - strandat 117.781 kb on + strandat 117.790 kb on + strandat 117.790 kb on + strandat 117.791 kb on - strandat 117.812 kb on + strandat 119.376 kb on + strandat 119.428 kb on + strandat 119.428 kb on + strandat 119.428 kb on + strandat 119.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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117,336 + H281DRAFT_04401 0.68 +0.3
117,366 + H281DRAFT_04401 0.70 -0.7
117,366 + H281DRAFT_04401 0.70 -0.3
117,367 - H281DRAFT_04401 0.70 +0.0
117,367 - H281DRAFT_04401 0.70 +0.9
117,367 - H281DRAFT_04401 0.70 +0.4
117,433 - H281DRAFT_04401 0.75 -0.3
117,433 - H281DRAFT_04401 0.75 +1.5
117,465 + H281DRAFT_04401 0.78 +1.9
117,465 + H281DRAFT_04401 0.78 -0.0
117,465 + H281DRAFT_04401 0.78 +0.0
117,466 - H281DRAFT_04401 0.78 +0.6
117,678 + +0.6
117,679 - +0.3
117,781 + +1.2
117,790 + -0.1
117,790 + -0.2
117,791 - -0.9
117,812 + -0.5
119,376 + -0.1
119,428 + -0.3
119,428 + +1.1
119,428 + +0.1
119,429 - -1.1

Or see this region's nucleotide sequence