Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03962

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03961 and H281DRAFT_03962 overlap by 1 nucleotidesH281DRAFT_03962 and H281DRAFT_03963 are separated by 152 nucleotides H281DRAFT_03961: H281DRAFT_03961 - xanthine dehydrogenase, small subunit (EC 1.17.1.4) (from data), at 64,628 to 66,256 _03961 H281DRAFT_03962: H281DRAFT_03962 - xanthine dehydrogenase, molybdenum binding subunit apoprotein, at 66,256 to 68,706 _03962 H281DRAFT_03963: H281DRAFT_03963 - molybdenum cofactor sulfurylase, at 68,859 to 69,875 _03963 Position (kb) 66 67 68 69Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 65.477 kb on + strand, within H281DRAFT_03961at 65.477 kb on + strand, within H281DRAFT_03961at 65.478 kb on - strand, within H281DRAFT_03961at 65.478 kb on - strand, within H281DRAFT_03961at 65.478 kb on - strand, within H281DRAFT_03961at 65.565 kb on - strand, within H281DRAFT_03961at 65.771 kb on + strand, within H281DRAFT_03961at 65.864 kb on + strand, within H281DRAFT_03961at 65.864 kb on + strand, within H281DRAFT_03961at 65.865 kb on - strand, within H281DRAFT_03961at 65.865 kb on - strand, within H281DRAFT_03961at 65.882 kb on + strand, within H281DRAFT_03961at 66.081 kb on - strand, within H281DRAFT_03961at 66.407 kb on - strandat 66.619 kb on + strand, within H281DRAFT_03962at 66.620 kb on - strand, within H281DRAFT_03962at 66.978 kb on + strand, within H281DRAFT_03962at 66.978 kb on + strand, within H281DRAFT_03962at 66.978 kb on + strand, within H281DRAFT_03962at 66.979 kb on - strand, within H281DRAFT_03962at 66.979 kb on - strand, within H281DRAFT_03962at 66.999 kb on + strand, within H281DRAFT_03962at 67.175 kb on - strand, within H281DRAFT_03962at 67.227 kb on - strand, within H281DRAFT_03962at 67.309 kb on + strand, within H281DRAFT_03962at 67.313 kb on - strand, within H281DRAFT_03962at 67.313 kb on - strand, within H281DRAFT_03962at 67.356 kb on + strand, within H281DRAFT_03962at 67.466 kb on + strand, within H281DRAFT_03962at 67.466 kb on + strand, within H281DRAFT_03962at 67.503 kb on + strand, within H281DRAFT_03962at 67.504 kb on - strand, within H281DRAFT_03962at 67.580 kb on - strand, within H281DRAFT_03962at 67.580 kb on - strand, within H281DRAFT_03962at 67.720 kb on + strand, within H281DRAFT_03962at 67.720 kb on + strand, within H281DRAFT_03962at 67.721 kb on - strand, within H281DRAFT_03962at 67.721 kb on - strand, within H281DRAFT_03962at 67.721 kb on - strand, within H281DRAFT_03962at 67.721 kb on - strand, within H281DRAFT_03962at 67.723 kb on - strand, within H281DRAFT_03962at 67.723 kb on - strand, within H281DRAFT_03962at 67.723 kb on - strand, within H281DRAFT_03962at 68.019 kb on - strand, within H281DRAFT_03962at 68.104 kb on + strand, within H281DRAFT_03962at 68.105 kb on - strand, within H281DRAFT_03962at 68.105 kb on - strand, within H281DRAFT_03962at 68.325 kb on + strand, within H281DRAFT_03962at 68.339 kb on + strand, within H281DRAFT_03962at 68.340 kb on - strand, within H281DRAFT_03962at 68.386 kb on + strand, within H281DRAFT_03962at 68.843 kb on + strandat 68.844 kb on - strandat 69.145 kb on + strand, within H281DRAFT_03963at 69.146 kb on - strand, within H281DRAFT_03963at 69.200 kb on + strand, within H281DRAFT_03963at 69.455 kb on - strand, within H281DRAFT_03963at 69.517 kb on + strand, within H281DRAFT_03963at 69.573 kb on - strand, within H281DRAFT_03963at 69.576 kb on + strand, within H281DRAFT_03963at 69.576 kb on + strand, within H281DRAFT_03963at 69.577 kb on - strand, within H281DRAFT_03963at 69.603 kb on - strand, within H281DRAFT_03963at 69.603 kb on - strand, within H281DRAFT_03963

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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65,477 + H281DRAFT_03961 0.52 -0.4
65,477 + H281DRAFT_03961 0.52 -1.4
65,478 - H281DRAFT_03961 0.52 -0.9
65,478 - H281DRAFT_03961 0.52 -3.1
65,478 - H281DRAFT_03961 0.52 -2.6
65,565 - H281DRAFT_03961 0.58 -1.5
65,771 + H281DRAFT_03961 0.70 -0.5
65,864 + H281DRAFT_03961 0.76 -1.8
65,864 + H281DRAFT_03961 0.76 -2.1
65,865 - H281DRAFT_03961 0.76 -0.7
65,865 - H281DRAFT_03961 0.76 -2.0
65,882 + H281DRAFT_03961 0.77 -1.5
66,081 - H281DRAFT_03961 0.89 -2.2
66,407 - -1.7
66,619 + H281DRAFT_03962 0.15 -1.6
66,620 - H281DRAFT_03962 0.15 -1.7
66,978 + H281DRAFT_03962 0.29 -0.1
66,978 + H281DRAFT_03962 0.29 +0.9
66,978 + H281DRAFT_03962 0.29 -0.9
66,979 - H281DRAFT_03962 0.29 +0.3
66,979 - H281DRAFT_03962 0.29 -2.2
66,999 + H281DRAFT_03962 0.30 -2.5
67,175 - H281DRAFT_03962 0.37 -1.4
67,227 - H281DRAFT_03962 0.40 -0.1
67,309 + H281DRAFT_03962 0.43 +0.9
67,313 - H281DRAFT_03962 0.43 +0.0
67,313 - H281DRAFT_03962 0.43 -1.2
67,356 + H281DRAFT_03962 0.45 -2.0
67,466 + H281DRAFT_03962 0.49 -0.7
67,466 + H281DRAFT_03962 0.49 -1.1
67,503 + H281DRAFT_03962 0.51 -1.4
67,504 - H281DRAFT_03962 0.51 -0.6
67,580 - H281DRAFT_03962 0.54 -0.1
67,580 - H281DRAFT_03962 0.54 -2.2
67,720 + H281DRAFT_03962 0.60 -1.9
67,720 + H281DRAFT_03962 0.60 -3.0
67,721 - H281DRAFT_03962 0.60 -2.7
67,721 - H281DRAFT_03962 0.60 -1.5
67,721 - H281DRAFT_03962 0.60 -1.4
67,721 - H281DRAFT_03962 0.60 -1.9
67,723 - H281DRAFT_03962 0.60 -2.0
67,723 - H281DRAFT_03962 0.60 -1.6
67,723 - H281DRAFT_03962 0.60 -1.4
68,019 - H281DRAFT_03962 0.72 -1.7
68,104 + H281DRAFT_03962 0.75 -2.7
68,105 - H281DRAFT_03962 0.75 -1.1
68,105 - H281DRAFT_03962 0.75 +0.3
68,325 + H281DRAFT_03962 0.84 -3.3
68,339 + H281DRAFT_03962 0.85 -2.1
68,340 - H281DRAFT_03962 0.85 -1.1
68,386 + H281DRAFT_03962 0.87 -1.0
68,843 + -3.3
68,844 - -1.3
69,145 + H281DRAFT_03963 0.28 -1.4
69,146 - H281DRAFT_03963 0.28 -0.2
69,200 + H281DRAFT_03963 0.34 -3.3
69,455 - H281DRAFT_03963 0.59 -1.8
69,517 + H281DRAFT_03963 0.65 -2.2
69,573 - H281DRAFT_03963 0.70 -1.1
69,576 + H281DRAFT_03963 0.71 -5.7
69,576 + H281DRAFT_03963 0.71 -1.3
69,577 - H281DRAFT_03963 0.71 -3.7
69,603 - H281DRAFT_03963 0.73 -0.5
69,603 - H281DRAFT_03963 0.73 -3.7

Or see this region's nucleotide sequence