Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02204

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02203 and H281DRAFT_02204 are separated by 179 nucleotidesH281DRAFT_02204 and H281DRAFT_02205 are separated by 594 nucleotides H281DRAFT_02203: H281DRAFT_02203 - SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase, at 344,138 to 345,340 _02203 H281DRAFT_02204: H281DRAFT_02204 - GTPase, G3E family, at 345,520 to 346,617 _02204 H281DRAFT_02205: H281DRAFT_02205 - transcriptional regulator, TraR/DksA family, at 347,212 to 347,631 _02205 Position (kb) 345 346 347Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 344.609 kb on + strand, within H281DRAFT_02203at 344.609 kb on + strand, within H281DRAFT_02203at 344.609 kb on + strand, within H281DRAFT_02203at 344.610 kb on - strand, within H281DRAFT_02203at 344.749 kb on + strandat 344.750 kb on - strand, within H281DRAFT_02203at 344.762 kb on + strand, within H281DRAFT_02203at 344.762 kb on + strand, within H281DRAFT_02203at 344.762 kb on + strand, within H281DRAFT_02203at 344.837 kb on + strand, within H281DRAFT_02203at 345.102 kb on - strand, within H281DRAFT_02203at 345.102 kb on - strand, within H281DRAFT_02203at 345.102 kb on - strand, within H281DRAFT_02203at 345.102 kb on - strand, within H281DRAFT_02203at 345.161 kb on + strand, within H281DRAFT_02203at 345.162 kb on - strand, within H281DRAFT_02203at 345.308 kb on + strandat 345.309 kb on - strandat 345.309 kb on - strandat 345.349 kb on - strandat 345.360 kb on + strandat 345.425 kb on + strandat 345.425 kb on + strandat 345.425 kb on + strandat 345.425 kb on + strandat 345.426 kb on - strandat 345.436 kb on - strandat 345.443 kb on + strandat 345.506 kb on + strandat 345.506 kb on + strandat 345.506 kb on + strandat 345.506 kb on + strandat 345.507 kb on - strandat 345.507 kb on - strandat 345.507 kb on - strandat 345.507 kb on - strandat 345.508 kb on + strandat 345.508 kb on + strandat 345.509 kb on - strandat 345.509 kb on - strandat 345.509 kb on - strandat 345.717 kb on + strand, within H281DRAFT_02204at 345.718 kb on - strand, within H281DRAFT_02204at 345.718 kb on - strand, within H281DRAFT_02204at 345.898 kb on - strand, within H281DRAFT_02204at 346.186 kb on - strand, within H281DRAFT_02204at 346.186 kb on - strand, within H281DRAFT_02204at 346.429 kb on + strand, within H281DRAFT_02204at 346.430 kb on - strand, within H281DRAFT_02204at 346.444 kb on + strand, within H281DRAFT_02204at 346.445 kb on - strand, within H281DRAFT_02204at 346.445 kb on - strand, within H281DRAFT_02204at 346.445 kb on - strand, within H281DRAFT_02204at 346.445 kb on - strand, within H281DRAFT_02204at 346.587 kb on + strandat 346.587 kb on + strandat 346.588 kb on - strandat 346.588 kb on - strandat 346.588 kb on - strandat 346.642 kb on + strandat 346.642 kb on + strandat 346.736 kb on - strandat 346.738 kb on + strandat 346.738 kb on + strandat 346.739 kb on - strandat 346.779 kb on - strandat 346.780 kb on + strandat 346.847 kb on + strandat 346.848 kb on - strandat 346.848 kb on - strandat 346.852 kb on + strandat 346.852 kb on + strandat 346.852 kb on + strandat 346.853 kb on - strandat 346.853 kb on - strandat 346.853 kb on - strandat 347.005 kb on + strandat 347.006 kb on - strandat 347.006 kb on - strandat 347.062 kb on - strandat 347.174 kb on + strandat 347.174 kb on + strandat 347.174 kb on + strandat 347.269 kb on + strand, within H281DRAFT_02205at 347.270 kb on - strand, within H281DRAFT_02205

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
remove
344,609 + H281DRAFT_02203 0.39 -0.4
344,609 + H281DRAFT_02203 0.39 +2.6
344,609 + H281DRAFT_02203 0.39 +0.0
344,610 - H281DRAFT_02203 0.39 +0.1
344,749 + +0.7
344,750 - H281DRAFT_02203 0.51 -0.7
344,762 + H281DRAFT_02203 0.52 +0.0
344,762 + H281DRAFT_02203 0.52 -1.4
344,762 + H281DRAFT_02203 0.52 -0.5
344,837 + H281DRAFT_02203 0.58 -0.9
345,102 - H281DRAFT_02203 0.80 -0.2
345,102 - H281DRAFT_02203 0.80 -0.2
345,102 - H281DRAFT_02203 0.80 -0.4
345,102 - H281DRAFT_02203 0.80 -0.6
345,161 + H281DRAFT_02203 0.85 -1.2
345,162 - H281DRAFT_02203 0.85 +1.4
345,308 + +0.1
345,309 - -0.1
345,309 - +0.6
345,349 - -0.3
345,360 + -0.9
345,425 + +0.2
345,425 + -0.6
345,425 + +0.2
345,425 + +0.9
345,426 - +0.3
345,436 - +0.8
345,443 + +0.1
345,506 + -0.1
345,506 + +0.4
345,506 + +0.0
345,506 + -0.1
345,507 - +1.3
345,507 - -0.2
345,507 - +0.3
345,507 - +0.5
345,508 + +1.3
345,508 + +0.6
345,509 - +0.4
345,509 - -0.2
345,509 - -0.4
345,717 + H281DRAFT_02204 0.18 +0.7
345,718 - H281DRAFT_02204 0.18 -0.1
345,718 - H281DRAFT_02204 0.18 +0.6
345,898 - H281DRAFT_02204 0.34 +2.3
346,186 - H281DRAFT_02204 0.61 +0.8
346,186 - H281DRAFT_02204 0.61 +1.3
346,429 + H281DRAFT_02204 0.83 +1.3
346,430 - H281DRAFT_02204 0.83 +0.9
346,444 + H281DRAFT_02204 0.84 -0.3
346,445 - H281DRAFT_02204 0.84 +0.7
346,445 - H281DRAFT_02204 0.84 +0.1
346,445 - H281DRAFT_02204 0.84 +1.2
346,445 - H281DRAFT_02204 0.84 -1.7
346,587 + +0.7
346,587 + +0.6
346,588 - -0.8
346,588 - -0.4
346,588 - -0.1
346,642 + -1.5
346,642 + -0.2
346,736 - -0.1
346,738 + +1.1
346,738 + +0.1
346,739 - +0.8
346,779 - -1.0
346,780 + +0.0
346,847 + +1.4
346,848 - -1.2
346,848 - -0.7
346,852 + -0.7
346,852 + -1.4
346,852 + -0.6
346,853 - -1.2
346,853 - -3.9
346,853 - -2.6
347,005 + +1.0
347,006 - -0.9
347,006 - -4.5
347,062 - -3.0
347,174 + +0.7
347,174 + +0.6
347,174 + +0.7
347,269 + H281DRAFT_02205 0.14 -1.4
347,270 - H281DRAFT_02205 0.14 -2.7

Or see this region's nucleotide sequence