Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02098

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02097 and H281DRAFT_02098 are separated by 86 nucleotidesH281DRAFT_02098 and H281DRAFT_02099 are separated by 191 nucleotides H281DRAFT_02097: H281DRAFT_02097 - biotin synthase, at 223,610 to 224,737 _02097 H281DRAFT_02098: H281DRAFT_02098 - sulfate transport system substrate-binding protein, at 224,824 to 225,849 _02098 H281DRAFT_02099: H281DRAFT_02099 - hypothetical protein, at 226,041 to 226,643 _02099 Position (kb) 224 225 226Strain fitness (log2 ratio) -2 -1 0 1 2at 223.915 kb on + strand, within H281DRAFT_02097at 224.160 kb on - strand, within H281DRAFT_02097at 224.162 kb on + strand, within H281DRAFT_02097at 224.162 kb on + strand, within H281DRAFT_02097at 224.163 kb on - strand, within H281DRAFT_02097at 224.223 kb on - strandat 224.223 kb on - strand, within H281DRAFT_02097at 224.736 kb on - strandat 224.736 kb on - strandat 224.736 kb on - strandat 224.736 kb on - strandat 224.740 kb on - strandat 224.758 kb on - strandat 224.790 kb on - strandat 224.821 kb on + strandat 224.825 kb on + strandat 224.825 kb on + strandat 224.826 kb on - strandat 225.025 kb on + strand, within H281DRAFT_02098at 225.025 kb on + strand, within H281DRAFT_02098at 225.025 kb on + strand, within H281DRAFT_02098at 225.026 kb on - strand, within H281DRAFT_02098at 225.029 kb on + strand, within H281DRAFT_02098at 225.030 kb on - strand, within H281DRAFT_02098at 225.038 kb on + strand, within H281DRAFT_02098at 225.350 kb on + strand, within H281DRAFT_02098at 225.351 kb on - strand, within H281DRAFT_02098at 225.351 kb on - strand, within H281DRAFT_02098at 225.351 kb on - strand, within H281DRAFT_02098at 225.354 kb on + strand, within H281DRAFT_02098at 225.354 kb on + strand, within H281DRAFT_02098at 225.354 kb on + strand, within H281DRAFT_02098at 225.354 kb on + strand, within H281DRAFT_02098at 225.355 kb on - strand, within H281DRAFT_02098at 225.355 kb on - strand, within H281DRAFT_02098at 225.355 kb on - strand, within H281DRAFT_02098at 225.356 kb on + strand, within H281DRAFT_02098at 225.475 kb on - strand, within H281DRAFT_02098at 225.713 kb on + strand, within H281DRAFT_02098at 225.735 kb on - strand, within H281DRAFT_02098at 225.843 kb on - strandat 225.843 kb on - strandat 225.843 kb on - strandat 225.994 kb on + strandat 225.994 kb on + strandat 226.421 kb on + strand, within H281DRAFT_02099at 226.422 kb on - strand, within H281DRAFT_02099at 226.824 kb on - strandat 226.829 kb on + strandat 226.829 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
remove
223,915 + H281DRAFT_02097 0.27 -2.3
224,160 - H281DRAFT_02097 0.49 -0.5
224,162 + H281DRAFT_02097 0.49 +0.1
224,162 + H281DRAFT_02097 0.49 +2.1
224,163 - H281DRAFT_02097 0.49 -0.9
224,223 - +1.1
224,223 - H281DRAFT_02097 0.54 -1.3
224,736 - -0.3
224,736 - +0.4
224,736 - +0.1
224,736 - -0.0
224,740 - -0.1
224,758 - +0.2
224,790 - +2.7
224,821 + -0.5
224,825 + +0.4
224,825 + +0.3
224,826 - -0.8
225,025 + H281DRAFT_02098 0.20 +0.3
225,025 + H281DRAFT_02098 0.20 +0.1
225,025 + H281DRAFT_02098 0.20 +1.1
225,026 - H281DRAFT_02098 0.20 +0.1
225,029 + H281DRAFT_02098 0.20 -0.1
225,030 - H281DRAFT_02098 0.20 +0.3
225,038 + H281DRAFT_02098 0.21 -1.6
225,350 + H281DRAFT_02098 0.51 +0.2
225,351 - H281DRAFT_02098 0.51 +0.2
225,351 - H281DRAFT_02098 0.51 +0.2
225,351 - H281DRAFT_02098 0.51 -1.4
225,354 + H281DRAFT_02098 0.52 +0.4
225,354 + H281DRAFT_02098 0.52 +0.3
225,354 + H281DRAFT_02098 0.52 +0.2
225,354 + H281DRAFT_02098 0.52 +1.1
225,355 - H281DRAFT_02098 0.52 -2.5
225,355 - H281DRAFT_02098 0.52 +1.3
225,355 - H281DRAFT_02098 0.52 +0.8
225,356 + H281DRAFT_02098 0.52 +0.7
225,475 - H281DRAFT_02098 0.63 +0.4
225,713 + H281DRAFT_02098 0.87 +0.0
225,735 - H281DRAFT_02098 0.89 -0.3
225,843 - -0.1
225,843 - -0.1
225,843 - -0.3
225,994 + -0.0
225,994 + -0.4
226,421 + H281DRAFT_02099 0.63 -0.8
226,422 - H281DRAFT_02099 0.63 +0.2
226,824 - +0.7
226,829 + +0.2
226,829 + +0.3

Or see this region's nucleotide sequence