Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19025

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19020 and CSW01_19025 are separated by 153 nucleotidesCSW01_19025 and CSW01_19030 are separated by 151 nucleotides CSW01_19020: CSW01_19020 - ABC transporter, at 927,288 to 928,031 _19020 CSW01_19025: CSW01_19025 - LysR family transcriptional regulator, at 928,185 to 929,084 _19025 CSW01_19030: CSW01_19030 - L-lactate permease, at 929,236 to 930,984 _19030 Position (kb) 928 929 930Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 927.219 kb on - strandat 927.223 kb on + strandat 927.412 kb on + strand, within CSW01_19020at 927.530 kb on - strand, within CSW01_19020at 927.621 kb on - strand, within CSW01_19020at 927.635 kb on + strand, within CSW01_19020at 927.635 kb on + strand, within CSW01_19020at 927.643 kb on - strand, within CSW01_19020at 927.789 kb on + strand, within CSW01_19020at 927.814 kb on + strand, within CSW01_19020at 927.814 kb on + strand, within CSW01_19020at 927.822 kb on - strand, within CSW01_19020at 927.834 kb on - strand, within CSW01_19020at 927.846 kb on + strand, within CSW01_19020at 927.871 kb on + strand, within CSW01_19020at 927.909 kb on + strand, within CSW01_19020at 927.909 kb on + strand, within CSW01_19020at 927.914 kb on + strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.922 kb on - strand, within CSW01_19020at 927.922 kb on - strand, within CSW01_19020at 927.955 kb on + strand, within CSW01_19020at 927.955 kb on - strand, within CSW01_19020at 927.963 kb on - strandat 927.963 kb on - strandat 927.963 kb on - strandat 928.017 kb on - strandat 928.077 kb on - strandat 928.352 kb on + strand, within CSW01_19025at 928.367 kb on + strand, within CSW01_19025at 928.376 kb on - strand, within CSW01_19025at 928.399 kb on + strand, within CSW01_19025at 928.399 kb on + strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.417 kb on - strand, within CSW01_19025at 928.417 kb on - strand, within CSW01_19025at 928.426 kb on + strand, within CSW01_19025at 928.445 kb on + strand, within CSW01_19025at 928.688 kb on + strand, within CSW01_19025at 928.740 kb on - strand, within CSW01_19025at 928.801 kb on + strand, within CSW01_19025at 929.226 kb on + strandat 929.226 kb on + strandat 929.234 kb on - strandat 929.267 kb on + strandat 929.267 kb on + strandat 929.275 kb on - strandat 929.302 kb on - strandat 929.319 kb on - strandat 929.344 kb on + strandat 929.352 kb on - strandat 929.407 kb on - strandat 929.407 kb on - strandat 929.541 kb on - strand, within CSW01_19030at 929.546 kb on - strand, within CSW01_19030at 929.641 kb on - strand, within CSW01_19030at 929.722 kb on + strand, within CSW01_19030at 929.730 kb on - strand, within CSW01_19030at 929.803 kb on + strand, within CSW01_19030at 929.803 kb on + strand, within CSW01_19030at 929.811 kb on - strand, within CSW01_19030at 929.811 kb on - strand, within CSW01_19030at 929.811 kb on - strand, within CSW01_19030at 929.838 kb on + strand, within CSW01_19030at 929.895 kb on + strand, within CSW01_19030at 929.925 kb on - strand, within CSW01_19030at 929.983 kb on + strand, within CSW01_19030at 930.031 kb on - strand, within CSW01_19030at 930.049 kb on + strand, within CSW01_19030at 930.053 kb on - strand, within CSW01_19030at 930.062 kb on + strand, within CSW01_19030

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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927,219 - -1.2
927,223 + -0.1
927,412 + CSW01_19020 0.17 -1.0
927,530 - CSW01_19020 0.33 -0.0
927,621 - CSW01_19020 0.45 -2.2
927,635 + CSW01_19020 0.47 -0.1
927,635 + CSW01_19020 0.47 +1.1
927,643 - CSW01_19020 0.48 -2.8
927,789 + CSW01_19020 0.67 +0.3
927,814 + CSW01_19020 0.71 -0.3
927,814 + CSW01_19020 0.71 -1.5
927,822 - CSW01_19020 0.72 +0.0
927,834 - CSW01_19020 0.73 +0.6
927,846 + CSW01_19020 0.75 -0.1
927,871 + CSW01_19020 0.78 -1.9
927,909 + CSW01_19020 0.83 +2.4
927,909 + CSW01_19020 0.83 -0.7
927,914 + CSW01_19020 0.84 -0.6
927,917 - CSW01_19020 0.85 -2.4
927,917 - CSW01_19020 0.85 +0.6
927,917 - CSW01_19020 0.85 +1.0
927,917 - CSW01_19020 0.85 -3.1
927,917 - CSW01_19020 0.85 -0.6
927,917 - CSW01_19020 0.85 -0.2
927,922 - CSW01_19020 0.85 -0.4
927,922 - CSW01_19020 0.85 +1.0
927,955 + CSW01_19020 0.90 +0.1
927,955 - CSW01_19020 0.90 +0.6
927,963 - +1.0
927,963 - +1.0
927,963 - -2.7
928,017 - -0.9
928,077 - -0.3
928,352 + CSW01_19025 0.19 +0.4
928,367 + CSW01_19025 0.20 +0.8
928,376 - CSW01_19025 0.21 +0.6
928,399 + CSW01_19025 0.24 -0.1
928,399 + CSW01_19025 0.24 -2.5
928,407 - CSW01_19025 0.25 +0.8
928,407 - CSW01_19025 0.25 -1.2
928,407 - CSW01_19025 0.25 +1.5
928,407 - CSW01_19025 0.25 +1.1
928,417 - CSW01_19025 0.26 -0.9
928,417 - CSW01_19025 0.26 +0.3
928,426 + CSW01_19025 0.27 +0.2
928,445 + CSW01_19025 0.29 +0.2
928,688 + CSW01_19025 0.56 +2.6
928,740 - CSW01_19025 0.62 -0.1
928,801 + CSW01_19025 0.68 +0.9
929,226 + -2.0
929,226 + -0.3
929,234 - -0.3
929,267 + -1.0
929,267 + -1.1
929,275 - +2.1
929,302 - -0.7
929,319 - +0.6
929,344 + -0.8
929,352 - +1.8
929,407 - +0.4
929,407 - -2.7
929,541 - CSW01_19030 0.17 -0.8
929,546 - CSW01_19030 0.18 +2.5
929,641 - CSW01_19030 0.23 +0.3
929,722 + CSW01_19030 0.28 +0.9
929,730 - CSW01_19030 0.28 +0.7
929,803 + CSW01_19030 0.32 -0.8
929,803 + CSW01_19030 0.32 -2.0
929,811 - CSW01_19030 0.33 +0.3
929,811 - CSW01_19030 0.33 -1.2
929,811 - CSW01_19030 0.33 -0.0
929,838 + CSW01_19030 0.34 +0.4
929,895 + CSW01_19030 0.38 -0.1
929,925 - CSW01_19030 0.39 -1.8
929,983 + CSW01_19030 0.43 -1.4
930,031 - CSW01_19030 0.45 -1.4
930,049 + CSW01_19030 0.46 +1.1
930,053 - CSW01_19030 0.47 +0.2
930,062 + CSW01_19030 0.47 +0.5

Or see this region's nucleotide sequence