Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19005

Experiment: ICP1_phage_235.3_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_19000 and CSW01_19005 are separated by 166 nucleotidesCSW01_19005 and CSW01_19010 are separated by 19 nucleotidesCSW01_19010 and CSW01_19015 are separated by 19 nucleotides CSW01_19000: CSW01_19000 - ABC transporter ATP-binding protein, at 923,072 to 924,691 _19000 CSW01_19005: CSW01_19005 - amino acid ABC transporter substrate-binding protein, at 924,858 to 925,589 _19005 CSW01_19010: CSW01_19010 - methyl-accepting chemotaxis protein, at 925,609 to 926,493 _19010 CSW01_19015: CSW01_19015 - chemotaxis protein, at 926,513 to 927,157 _19015 Position (kb) 924 925 926Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 923.963 kb on - strand, within CSW01_19000at 924.090 kb on - strand, within CSW01_19000at 924.118 kb on + strand, within CSW01_19000at 924.118 kb on - strand, within CSW01_19000at 924.118 kb on - strand, within CSW01_19000at 924.144 kb on + strand, within CSW01_19000at 924.157 kb on - strand, within CSW01_19000at 924.171 kb on - strand, within CSW01_19000at 924.254 kb on + strand, within CSW01_19000at 924.254 kb on + strand, within CSW01_19000at 924.262 kb on - strand, within CSW01_19000at 924.262 kb on - strand, within CSW01_19000at 924.276 kb on - strand, within CSW01_19000at 924.359 kb on + strand, within CSW01_19000at 924.427 kb on + strand, within CSW01_19000at 924.442 kb on + strand, within CSW01_19000at 924.512 kb on + strand, within CSW01_19000at 924.590 kb on + strandat 924.590 kb on + strandat 924.590 kb on + strandat 924.714 kb on + strandat 924.722 kb on - strandat 924.722 kb on - strandat 924.722 kb on - strandat 924.747 kb on + strandat 924.884 kb on - strandat 924.947 kb on + strand, within CSW01_19005at 925.130 kb on + strand, within CSW01_19005at 925.184 kb on + strand, within CSW01_19005at 925.184 kb on + strand, within CSW01_19005at 925.185 kb on + strand, within CSW01_19005at 925.308 kb on - strand, within CSW01_19005at 925.390 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.430 kb on - strand, within CSW01_19005at 925.532 kb on - strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.561 kb on - strandat 925.563 kb on + strandat 925.563 kb on + strandat 925.571 kb on - strandat 925.571 kb on - strandat 925.613 kb on + strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.630 kb on + strandat 925.630 kb on + strandat 925.696 kb on + strandat 925.696 kb on + strandat 925.704 kb on - strand, within CSW01_19010at 925.762 kb on + strand, within CSW01_19010at 925.891 kb on - strand, within CSW01_19010at 926.075 kb on + strand, within CSW01_19010at 926.213 kb on - strand, within CSW01_19010at 926.244 kb on - strand, within CSW01_19010at 926.308 kb on + strand, within CSW01_19010at 926.313 kb on + strand, within CSW01_19010at 926.316 kb on - strand, within CSW01_19010at 926.321 kb on - strand, within CSW01_19010at 926.321 kb on - strand, within CSW01_19010at 926.395 kb on + strand, within CSW01_19010at 926.426 kb on - strandat 926.437 kb on - strandat 926.437 kb on - strandat 926.460 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.473 kb on - strandat 926.473 kb on - strandat 926.475 kb on + strandat 926.483 kb on - strandat 926.488 kb on + strandat 926.541 kb on - strandat 926.562 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
remove
923,963 - CSW01_19000 0.55 +0.8
924,090 - CSW01_19000 0.63 -1.1
924,118 + CSW01_19000 0.65 +1.6
924,118 - CSW01_19000 0.65 -0.9
924,118 - CSW01_19000 0.65 -0.1
924,144 + CSW01_19000 0.66 +1.8
924,157 - CSW01_19000 0.67 -2.6
924,171 - CSW01_19000 0.68 -1.4
924,254 + CSW01_19000 0.73 -0.8
924,254 + CSW01_19000 0.73 -1.4
924,262 - CSW01_19000 0.73 -1.6
924,262 - CSW01_19000 0.73 +0.5
924,276 - CSW01_19000 0.74 -0.7
924,359 + CSW01_19000 0.79 +0.9
924,427 + CSW01_19000 0.84 +0.0
924,442 + CSW01_19000 0.85 -1.8
924,512 + CSW01_19000 0.89 -0.7
924,590 + +0.8
924,590 + -2.4
924,590 + -2.1
924,714 + -3.0
924,722 - -0.2
924,722 - -0.4
924,722 - +0.2
924,747 + +0.8
924,884 - -0.7
924,947 + CSW01_19005 0.12 -0.5
925,130 + CSW01_19005 0.37 -2.3
925,184 + CSW01_19005 0.45 +0.8
925,184 + CSW01_19005 0.45 +0.3
925,185 + CSW01_19005 0.45 +1.8
925,308 - CSW01_19005 0.61 +1.2
925,390 + CSW01_19005 0.73 -0.3
925,422 + CSW01_19005 0.77 +1.9
925,422 + CSW01_19005 0.77 +0.0
925,422 + CSW01_19005 0.77 +0.6
925,422 + CSW01_19005 0.77 +1.2
925,430 - CSW01_19005 0.78 -0.6
925,532 - +0.5
925,553 + -3.2
925,553 + +0.7
925,553 + -0.4
925,553 + +1.5
925,553 + -1.9
925,553 + -1.1
925,553 + -0.6
925,561 - -2.3
925,563 + -0.6
925,563 + -1.1
925,571 - +1.1
925,571 - -0.6
925,613 + +0.6
925,621 - -1.8
925,621 - -3.2
925,621 - +1.6
925,621 - +0.8
925,630 + -1.7
925,630 + +2.2
925,696 + -0.6
925,696 + +1.4
925,704 - CSW01_19010 0.11 +0.8
925,762 + CSW01_19010 0.17 -1.6
925,891 - CSW01_19010 0.32 +0.8
926,075 + CSW01_19010 0.53 +0.9
926,213 - CSW01_19010 0.68 -1.3
926,244 - CSW01_19010 0.72 -0.4
926,308 + CSW01_19010 0.79 -0.1
926,313 + CSW01_19010 0.80 -0.9
926,316 - CSW01_19010 0.80 -2.3
926,321 - CSW01_19010 0.80 +0.8
926,321 - CSW01_19010 0.80 -0.8
926,395 + CSW01_19010 0.89 -2.0
926,426 - +0.7
926,437 - -2.5
926,437 - +0.5
926,460 + -0.4
926,465 + +1.3
926,465 + +1.2
926,465 + -0.7
926,465 + +1.6
926,473 - +0.9
926,473 - -0.5
926,475 + +1.4
926,483 - -1.2
926,488 + -0.5
926,541 - +0.8
926,562 - +1.6

Or see this region's nucleotide sequence