Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18980

Experiment: ICP1_phage_235.3_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18975 and CSW01_18980 are separated by 56 nucleotidesCSW01_18980 and CSW01_18985 are separated by 32 nucleotides CSW01_18975: CSW01_18975 - MFS transporter, at 916,518 to 917,822 _18975 CSW01_18980: CSW01_18980 - hypothetical protein, at 917,879 to 918,052 _18980 CSW01_18985: CSW01_18985 - methyl-accepting chemotaxis protein, at 918,085 to 919,770 _18985 Position (kb) 917 918 919Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 916.918 kb on + strand, within CSW01_18975at 916.966 kb on + strand, within CSW01_18975at 916.966 kb on + strand, within CSW01_18975at 916.974 kb on - strand, within CSW01_18975at 916.976 kb on + strand, within CSW01_18975at 916.976 kb on + strand, within CSW01_18975at 916.976 kb on + strand, within CSW01_18975at 916.987 kb on + strand, within CSW01_18975at 917.204 kb on + strand, within CSW01_18975at 917.204 kb on + strand, within CSW01_18975at 917.213 kb on - strand, within CSW01_18975at 917.273 kb on + strand, within CSW01_18975at 917.474 kb on - strand, within CSW01_18975at 917.474 kb on - strand, within CSW01_18975at 917.511 kb on - strand, within CSW01_18975at 917.518 kb on - strand, within CSW01_18975at 917.579 kb on + strand, within CSW01_18975at 917.587 kb on - strand, within CSW01_18975at 917.637 kb on + strand, within CSW01_18975at 917.705 kb on - strandat 917.729 kb on + strandat 917.729 kb on + strandat 918.270 kb on - strand, within CSW01_18985at 918.325 kb on + strand, within CSW01_18985at 918.365 kb on - strand, within CSW01_18985at 918.404 kb on + strand, within CSW01_18985at 918.404 kb on + strand, within CSW01_18985at 918.420 kb on - strand, within CSW01_18985at 918.452 kb on - strand, within CSW01_18985at 918.580 kb on - strand, within CSW01_18985at 918.593 kb on + strand, within CSW01_18985at 918.601 kb on - strand, within CSW01_18985at 918.641 kb on + strand, within CSW01_18985at 918.656 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.934 kb on - strand, within CSW01_18985at 918.937 kb on - strand, within CSW01_18985at 918.937 kb on - strand, within CSW01_18985at 918.937 kb on - strand, within CSW01_18985at 918.937 kb on - strand, within CSW01_18985at 918.952 kb on + strand, within CSW01_18985at 918.957 kb on + strand, within CSW01_18985

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
remove
916,918 + CSW01_18975 0.31 -0.1
916,966 + CSW01_18975 0.34 -0.8
916,966 + CSW01_18975 0.34 -1.7
916,974 - CSW01_18975 0.35 -3.2
916,976 + CSW01_18975 0.35 -0.1
916,976 + CSW01_18975 0.35 -0.9
916,976 + CSW01_18975 0.35 +0.1
916,987 + CSW01_18975 0.36 -0.0
917,204 + CSW01_18975 0.53 -0.1
917,204 + CSW01_18975 0.53 +0.6
917,213 - CSW01_18975 0.53 -0.8
917,273 + CSW01_18975 0.58 -1.6
917,474 - CSW01_18975 0.73 -0.1
917,474 - CSW01_18975 0.73 -1.3
917,511 - CSW01_18975 0.76 -0.2
917,518 - CSW01_18975 0.77 +0.6
917,579 + CSW01_18975 0.81 +0.6
917,587 - CSW01_18975 0.82 -0.0
917,637 + CSW01_18975 0.86 +0.7
917,705 - +0.5
917,729 + +0.8
917,729 + +0.8
918,270 - CSW01_18985 0.11 +0.6
918,325 + CSW01_18985 0.14 -1.5
918,365 - CSW01_18985 0.17 -0.2
918,404 + CSW01_18985 0.19 -0.1
918,404 + CSW01_18985 0.19 -2.3
918,420 - CSW01_18985 0.20 -0.1
918,452 - CSW01_18985 0.22 +0.8
918,580 - CSW01_18985 0.29 +1.8
918,593 + CSW01_18985 0.30 +0.9
918,601 - CSW01_18985 0.31 -2.0
918,641 + CSW01_18985 0.33 -1.3
918,656 + CSW01_18985 0.34 +0.6
918,929 + CSW01_18985 0.50 +0.3
918,929 + CSW01_18985 0.50 +0.7
918,929 + CSW01_18985 0.50 +1.2
918,929 + CSW01_18985 0.50 +0.3
918,929 + CSW01_18985 0.50 -0.3
918,929 + CSW01_18985 0.50 +0.1
918,929 + CSW01_18985 0.50 +0.9
918,934 - CSW01_18985 0.50 -1.5
918,937 - CSW01_18985 0.51 -2.6
918,937 - CSW01_18985 0.51 -1.9
918,937 - CSW01_18985 0.51 -1.0
918,937 - CSW01_18985 0.51 +1.6
918,952 + CSW01_18985 0.51 +0.6
918,957 + CSW01_18985 0.52 -1.2

Or see this region's nucleotide sequence