Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18875 and CSW01_18880 are separated by 206 nucleotides CSW01_18880 and CSW01_18885 are separated by 166 nucleotides CSW01_18885 and CSW01_18890 are separated by 577 nucleotides
CSW01_18875: CSW01_18875 - SM-20 protein, at 898,302 to 898,919
_18875
CSW01_18880: CSW01_18880 - hypothetical protein, at 899,126 to 899,446
_18880
CSW01_18885: CSW01_18885 - helix-turn-helix transcriptional regulator, at 899,613 to 900,287
_18885
CSW01_18890: CSW01_18890 - peptidyl-prolyl cis-trans isomerase, at 900,865 to 901,143
_18890
Position (kb) 899
900
901 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 898.624 kb on + strand, within CSW01_18875 at 898.658 kb on + strand, within CSW01_18875 at 898.663 kb on + strand, within CSW01_18875 at 898.671 kb on - strand, within CSW01_18875 at 898.692 kb on + strand, within CSW01_18875 at 898.700 kb on - strand, within CSW01_18875 at 898.700 kb on - strand, within CSW01_18875 at 898.817 kb on + strand, within CSW01_18875 at 898.817 kb on + strand, within CSW01_18875 at 898.824 kb on + strand, within CSW01_18875 at 898.825 kb on - strand, within CSW01_18875 at 898.825 kb on - strand, within CSW01_18875 at 898.825 kb on - strand, within CSW01_18875 at 898.840 kb on - strand, within CSW01_18875 at 899.146 kb on - strand at 899.263 kb on + strand, within CSW01_18880 at 899.263 kb on + strand, within CSW01_18880 at 899.271 kb on - strand, within CSW01_18880 at 899.279 kb on - strand, within CSW01_18880 at 899.324 kb on - strand, within CSW01_18880 at 899.400 kb on - strand, within CSW01_18880 at 899.424 kb on + strand at 899.459 kb on - strand at 899.460 kb on - strand at 899.460 kb on - strand at 899.465 kb on + strand at 899.528 kb on + strand at 899.532 kb on + strand at 899.542 kb on + strand at 899.542 kb on + strand at 899.542 kb on + strand at 899.542 kb on + strand at 899.560 kb on - strand at 899.560 kb on - strand at 899.598 kb on + strand at 899.598 kb on + strand at 899.598 kb on + strand at 899.606 kb on - strand at 899.606 kb on - strand at 899.650 kb on + strand at 899.655 kb on + strand at 899.655 kb on + strand at 899.720 kb on - strand, within CSW01_18885 at 899.739 kb on + strand, within CSW01_18885 at 899.832 kb on + strand, within CSW01_18885 at 899.840 kb on - strand, within CSW01_18885 at 899.845 kb on - strand, within CSW01_18885 at 899.854 kb on + strand, within CSW01_18885 at 899.882 kb on + strand, within CSW01_18885 at 899.890 kb on - strand, within CSW01_18885 at 899.890 kb on - strand, within CSW01_18885 at 899.926 kb on + strand, within CSW01_18885 at 899.926 kb on + strand, within CSW01_18885 at 899.926 kb on + strand, within CSW01_18885 at 899.934 kb on - strand, within CSW01_18885 at 899.934 kb on - strand, within CSW01_18885 at 899.934 kb on - strand, within CSW01_18885 at 899.934 kb on - strand, within CSW01_18885 at 899.934 kb on - strand, within CSW01_18885 at 899.944 kb on - strand, within CSW01_18885 at 899.944 kb on - strand, within CSW01_18885 at 900.027 kb on - strand, within CSW01_18885 at 900.046 kb on + strand, within CSW01_18885 at 900.049 kb on + strand, within CSW01_18885 at 900.054 kb on - strand, within CSW01_18885 at 900.054 kb on - strand, within CSW01_18885 at 900.057 kb on - strand, within CSW01_18885 at 900.057 kb on - strand, within CSW01_18885 at 900.057 kb on - strand, within CSW01_18885 at 900.086 kb on - strand, within CSW01_18885 at 900.152 kb on + strand, within CSW01_18885 at 900.160 kb on - strand, within CSW01_18885 at 900.200 kb on + strand, within CSW01_18885 at 900.262 kb on - strand at 900.294 kb on + strand at 900.294 kb on + strand at 900.297 kb on + strand at 900.302 kb on - strand at 900.304 kb on + strand at 900.304 kb on + strand at 900.304 kb on + strand at 900.304 kb on + strand at 900.304 kb on + strand at 900.304 kb on - strand at 900.304 kb on - strand at 900.304 kb on - strand at 900.304 kb on - strand at 900.307 kb on - strand at 900.310 kb on + strand at 900.310 kb on + strand at 900.312 kb on - strand at 900.312 kb on - strand at 900.312 kb on - strand at 900.312 kb on - strand at 900.312 kb on - strand at 900.319 kb on + strand at 900.319 kb on + strand at 900.319 kb on + strand at 900.319 kb on + strand at 900.352 kb on - strand at 900.525 kb on + strand at 900.576 kb on - strand at 900.713 kb on + strand at 900.713 kb on + strand at 900.713 kb on + strand at 900.713 kb on + strand at 900.714 kb on + strand at 900.721 kb on - strand at 900.721 kb on - strand at 900.727 kb on + strand at 900.729 kb on + strand at 900.735 kb on - strand at 900.770 kb on + strand at 900.778 kb on - strand at 900.778 kb on - strand at 900.778 kb on - strand at 900.789 kb on + strand at 900.800 kb on + strand at 900.800 kb on + strand at 900.800 kb on + strand at 900.808 kb on - strand at 900.813 kb on + strand at 900.813 kb on + strand at 900.813 kb on + strand at 900.815 kb on + strand at 900.815 kb on + strand at 900.815 kb on + strand at 900.821 kb on - strand at 900.821 kb on - strand at 900.823 kb on - strand at 900.842 kb on - strand at 900.918 kb on + strand, within CSW01_18890 at 900.918 kb on + strand, within CSW01_18890 at 900.921 kb on - strand, within CSW01_18890 at 900.921 kb on - strand, within CSW01_18890 at 900.978 kb on - strand, within CSW01_18890 at 901.025 kb on + strand, within CSW01_18890 at 901.033 kb on - strand, within CSW01_18890 at 901.033 kb on - strand, within CSW01_18890 at 901.095 kb on + strand, within CSW01_18890 at 901.106 kb on - strand, within CSW01_18890 at 901.133 kb on - strand at 901.207 kb on + strand at 901.282 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 898,624 + CSW01_18875 0.52 +0.0 898,658 + CSW01_18875 0.58 +0.7 898,663 + CSW01_18875 0.58 -1.9 898,671 - CSW01_18875 0.60 +1.5 898,692 + CSW01_18875 0.63 -1.7 898,700 - CSW01_18875 0.64 -1.9 898,700 - CSW01_18875 0.64 +0.6 898,817 + CSW01_18875 0.83 +0.3 898,817 + CSW01_18875 0.83 -1.2 898,824 + CSW01_18875 0.84 +0.3 898,825 - CSW01_18875 0.85 +0.7 898,825 - CSW01_18875 0.85 +0.8 898,825 - CSW01_18875 0.85 -0.2 898,840 - CSW01_18875 0.87 +0.5 899,146 - -0.7 899,263 + CSW01_18880 0.43 -1.0 899,263 + CSW01_18880 0.43 -0.5 899,271 - CSW01_18880 0.45 +1.4 899,279 - CSW01_18880 0.48 +0.7 899,324 - CSW01_18880 0.62 +0.0 899,400 - CSW01_18880 0.85 +1.0 899,424 + +0.1 899,459 - -1.1 899,460 - -0.2 899,460 - -1.9 899,465 + +0.7 899,528 + -0.9 899,532 + +0.1 899,542 + +0.4 899,542 + -0.2 899,542 + -1.2 899,542 + +0.0 899,560 - +0.1 899,560 - +0.4 899,598 + +0.9 899,598 + -0.0 899,598 + +0.7 899,606 - +0.9 899,606 - -0.9 899,650 + +0.7 899,655 + -1.8 899,655 + +0.4 899,720 - CSW01_18885 0.16 -1.7 899,739 + CSW01_18885 0.19 -0.7 899,832 + CSW01_18885 0.32 -2.0 899,840 - CSW01_18885 0.34 -0.6 899,845 - CSW01_18885 0.34 +0.4 899,854 + CSW01_18885 0.36 +0.5 899,882 + CSW01_18885 0.40 +0.2 899,890 - CSW01_18885 0.41 +0.0 899,890 - CSW01_18885 0.41 +1.5 899,926 + CSW01_18885 0.46 -0.6 899,926 + CSW01_18885 0.46 -1.6 899,926 + CSW01_18885 0.46 -1.9 899,934 - CSW01_18885 0.48 -0.2 899,934 - CSW01_18885 0.48 +0.5 899,934 - CSW01_18885 0.48 -1.5 899,934 - CSW01_18885 0.48 +1.9 899,934 - CSW01_18885 0.48 -0.0 899,944 - CSW01_18885 0.49 -0.2 899,944 - CSW01_18885 0.49 +1.3 900,027 - CSW01_18885 0.61 -1.0 900,046 + CSW01_18885 0.64 -2.7 900,049 + CSW01_18885 0.65 -0.7 900,054 - CSW01_18885 0.65 -3.0 900,054 - CSW01_18885 0.65 -0.5 900,057 - CSW01_18885 0.66 +1.7 900,057 - CSW01_18885 0.66 -0.7 900,057 - CSW01_18885 0.66 -0.0 900,086 - CSW01_18885 0.70 -1.3 900,152 + CSW01_18885 0.80 +0.9 900,160 - CSW01_18885 0.81 +1.6 900,200 + CSW01_18885 0.87 -0.1 900,262 - +0.8 900,294 + -2.2 900,294 + +0.3 900,297 + +0.5 900,302 - +0.3 900,304 + -2.1 900,304 + -0.9 900,304 + -0.5 900,304 + -0.2 900,304 + -2.2 900,304 - -2.1 900,304 - -2.3 900,304 - +0.7 900,304 - -1.3 900,307 - +0.2 900,310 + -0.5 900,310 + +0.9 900,312 - -0.0 900,312 - +1.8 900,312 - -0.9 900,312 - -0.7 900,312 - -1.5 900,319 + -1.3 900,319 + -0.6 900,319 + -1.5 900,319 + +0.6 900,352 - -3.1 900,525 + -1.2 900,576 - -0.4 900,713 + -0.3 900,713 + -1.9 900,713 + -0.7 900,713 + +0.2 900,714 + -2.5 900,721 - -1.0 900,721 - -0.6 900,727 + +0.0 900,729 + -0.9 900,735 - -2.3 900,770 + +0.7 900,778 - -0.1 900,778 - -0.7 900,778 - -1.5 900,789 + -1.1 900,800 + -1.5 900,800 + -2.5 900,800 + -1.3 900,808 - +0.9 900,813 + -0.4 900,813 + +0.1 900,813 + -2.9 900,815 + -2.7 900,815 + -0.4 900,815 + +1.0 900,821 - -2.3 900,821 - -0.1 900,823 - -0.4 900,842 - -0.4 900,918 + CSW01_18890 0.19 +1.0 900,918 + CSW01_18890 0.19 -0.2 900,921 - CSW01_18890 0.20 +0.3 900,921 - CSW01_18890 0.20 -1.5 900,978 - CSW01_18890 0.41 -2.2 901,025 + CSW01_18890 0.57 -1.3 901,033 - CSW01_18890 0.60 -2.4 901,033 - CSW01_18890 0.60 -0.0 901,095 + CSW01_18890 0.82 +0.4 901,106 - CSW01_18890 0.86 -0.8 901,133 - +1.2 901,207 + -1.9 901,282 + -0.7
Or see this region's nucleotide sequence