Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18805

Experiment: ICP1_phage_235.3_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18795 and CSW01_18800 are separated by 177 nucleotidesCSW01_18800 and CSW01_18805 are separated by 182 nucleotidesCSW01_18805 and CSW01_18810 are separated by 211 nucleotides CSW01_18795: CSW01_18795 - cold-shock protein CspV, at 884,255 to 884,467 _18795 CSW01_18800: CSW01_18800 - hypothetical protein, at 884,645 to 884,854 _18800 CSW01_18805: CSW01_18805 - hypothetical protein, at 885,037 to 885,393 _18805 CSW01_18810: CSW01_18810 - DUF2817 domain-containing protein, at 885,605 to 886,543 _18810 Position (kb) 885 886Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 884.070 kb on - strandat 884.304 kb on - strand, within CSW01_18795at 884.321 kb on + strand, within CSW01_18795at 884.323 kb on + strand, within CSW01_18795at 884.323 kb on + strand, within CSW01_18795at 884.323 kb on + strand, within CSW01_18795at 884.331 kb on - strand, within CSW01_18795at 884.331 kb on - strand, within CSW01_18795at 884.342 kb on - strand, within CSW01_18795at 884.353 kb on + strand, within CSW01_18795at 884.368 kb on + strand, within CSW01_18795at 884.368 kb on + strand, within CSW01_18795at 884.368 kb on + strand, within CSW01_18795at 884.368 kb on + strand, within CSW01_18795at 884.402 kb on + strand, within CSW01_18795at 884.404 kb on - strand, within CSW01_18795at 884.411 kb on - strand, within CSW01_18795at 884.425 kb on + strand, within CSW01_18795at 884.436 kb on + strand, within CSW01_18795at 884.444 kb on - strand, within CSW01_18795at 884.444 kb on - strand, within CSW01_18795at 884.445 kb on + strand, within CSW01_18795at 884.445 kb on + strand, within CSW01_18795at 884.445 kb on + strand, within CSW01_18795at 884.446 kb on + strandat 884.462 kb on + strandat 884.478 kb on + strandat 884.485 kb on + strandat 884.492 kb on + strandat 884.500 kb on - strandat 884.547 kb on + strandat 884.547 kb on + strandat 884.555 kb on - strandat 884.579 kb on + strandat 884.584 kb on - strandat 884.587 kb on - strandat 884.595 kb on - strandat 884.730 kb on + strand, within CSW01_18800at 884.730 kb on + strand, within CSW01_18800at 884.730 kb on + strand, within CSW01_18800at 884.730 kb on + strand, within CSW01_18800at 884.730 kb on + strand, within CSW01_18800at 884.730 kb on + strand, within CSW01_18800at 884.730 kb on + strand, within CSW01_18800at 884.735 kb on + strand, within CSW01_18800at 884.735 kb on + strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.743 kb on - strand, within CSW01_18800at 884.751 kb on + strand, within CSW01_18800at 884.836 kb on - strandat 884.980 kb on - strandat 884.991 kb on + strandat 884.999 kb on - strandat 884.999 kb on - strandat 884.999 kb on - strandat 884.999 kb on - strandat 884.999 kb on - strandat 884.999 kb on - strandat 884.999 kb on - strandat 885.001 kb on + strandat 885.001 kb on - strandat 885.007 kb on + strandat 885.007 kb on + strandat 885.007 kb on + strandat 885.008 kb on - strandat 885.020 kb on - strandat 885.024 kb on + strandat 885.039 kb on - strandat 885.136 kb on - strand, within CSW01_18805at 885.151 kb on - strand, within CSW01_18805at 885.167 kb on + strand, within CSW01_18805at 885.214 kb on + strand, within CSW01_18805at 885.221 kb on + strand, within CSW01_18805at 885.221 kb on + strand, within CSW01_18805at 885.230 kb on - strand, within CSW01_18805at 885.302 kb on - strand, within CSW01_18805at 885.302 kb on - strand, within CSW01_18805at 885.305 kb on + strand, within CSW01_18805at 885.308 kb on - strand, within CSW01_18805at 885.312 kb on + strand, within CSW01_18805at 885.328 kb on + strand, within CSW01_18805at 885.404 kb on + strandat 885.404 kb on + strandat 885.409 kb on + strandat 885.409 kb on + strandat 885.412 kb on - strandat 885.412 kb on - strandat 885.414 kb on + strandat 885.422 kb on - strandat 885.427 kb on - strandat 885.454 kb on + strandat 885.454 kb on + strandat 885.459 kb on + strandat 885.514 kb on + strandat 885.541 kb on + strandat 885.574 kb on - strandat 885.630 kb on - strandat 885.649 kb on + strandat 885.675 kb on - strandat 885.765 kb on + strand, within CSW01_18810at 885.853 kb on + strand, within CSW01_18810at 885.864 kb on + strand, within CSW01_18810at 885.874 kb on - strand, within CSW01_18810at 885.942 kb on + strand, within CSW01_18810at 886.050 kb on - strand, within CSW01_18810at 886.064 kb on + strand, within CSW01_18810at 886.110 kb on + strand, within CSW01_18810at 886.118 kb on - strand, within CSW01_18810at 886.178 kb on + strand, within CSW01_18810at 886.178 kb on + strand, within CSW01_18810at 886.186 kb on - strand, within CSW01_18810at 886.188 kb on + strand, within CSW01_18810at 886.204 kb on - strand, within CSW01_18810at 886.213 kb on + strand, within CSW01_18810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
remove
884,070 - +0.1
884,304 - CSW01_18795 0.23 +0.5
884,321 + CSW01_18795 0.31 -0.7
884,323 + CSW01_18795 0.32 +1.1
884,323 + CSW01_18795 0.32 +0.2
884,323 + CSW01_18795 0.32 -0.1
884,331 - CSW01_18795 0.36 -1.7
884,331 - CSW01_18795 0.36 +0.1
884,342 - CSW01_18795 0.41 -0.6
884,353 + CSW01_18795 0.46 +0.7
884,368 + CSW01_18795 0.53 -0.1
884,368 + CSW01_18795 0.53 +1.7
884,368 + CSW01_18795 0.53 +0.2
884,368 + CSW01_18795 0.53 +1.2
884,402 + CSW01_18795 0.69 -1.1
884,404 - CSW01_18795 0.70 -0.5
884,411 - CSW01_18795 0.73 +0.9
884,425 + CSW01_18795 0.80 +1.0
884,436 + CSW01_18795 0.85 +1.3
884,444 - CSW01_18795 0.89 +1.0
884,444 - CSW01_18795 0.89 +0.7
884,445 + CSW01_18795 0.89 +0.3
884,445 + CSW01_18795 0.89 +0.9
884,445 + CSW01_18795 0.89 +1.1
884,446 + +1.4
884,462 + +0.5
884,478 + -2.9
884,485 + -1.8
884,492 + +0.2
884,500 - -0.5
884,547 + +1.5
884,547 + -2.6
884,555 - -0.9
884,579 + -0.9
884,584 - -0.9
884,587 - -0.6
884,595 - -1.3
884,730 + CSW01_18800 0.40 -1.0
884,730 + CSW01_18800 0.40 -0.8
884,730 + CSW01_18800 0.40 -2.0
884,730 + CSW01_18800 0.40 +0.8
884,730 + CSW01_18800 0.40 +1.0
884,730 + CSW01_18800 0.40 +0.1
884,730 + CSW01_18800 0.40 +0.4
884,735 + CSW01_18800 0.43 -1.4
884,735 + CSW01_18800 0.43 -0.0
884,738 - CSW01_18800 0.44 +0.6
884,738 - CSW01_18800 0.44 +0.8
884,738 - CSW01_18800 0.44 -0.1
884,738 - CSW01_18800 0.44 +1.4
884,738 - CSW01_18800 0.44 -2.6
884,738 - CSW01_18800 0.44 +0.6
884,738 - CSW01_18800 0.44 -0.7
884,738 - CSW01_18800 0.44 -1.1
884,738 - CSW01_18800 0.44 +0.7
884,738 - CSW01_18800 0.44 -0.4
884,738 - CSW01_18800 0.44 -0.1
884,738 - CSW01_18800 0.44 +0.9
884,738 - CSW01_18800 0.44 -0.0
884,738 - CSW01_18800 0.44 -0.4
884,743 - CSW01_18800 0.47 -0.2
884,751 + CSW01_18800 0.50 +0.6
884,836 - -0.2
884,980 - -2.2
884,991 + +1.3
884,999 - +0.8
884,999 - +0.6
884,999 - +0.7
884,999 - +0.3
884,999 - -1.9
884,999 - -1.2
884,999 - -1.6
885,001 + -1.4
885,001 - +1.3
885,007 + +2.1
885,007 + -0.1
885,007 + -0.6
885,008 - -0.9
885,020 - -0.6
885,024 + -0.7
885,039 - -1.9
885,136 - CSW01_18805 0.28 +0.8
885,151 - CSW01_18805 0.32 -0.8
885,167 + CSW01_18805 0.36 +0.7
885,214 + CSW01_18805 0.50 -0.9
885,221 + CSW01_18805 0.52 -1.6
885,221 + CSW01_18805 0.52 -2.9
885,230 - CSW01_18805 0.54 +0.0
885,302 - CSW01_18805 0.74 -1.1
885,302 - CSW01_18805 0.74 +0.9
885,305 + CSW01_18805 0.75 -0.0
885,308 - CSW01_18805 0.76 -0.8
885,312 + CSW01_18805 0.77 -0.1
885,328 + CSW01_18805 0.82 -0.5
885,404 + +0.4
885,404 + -1.9
885,409 + -0.4
885,409 + +1.3
885,412 - +2.7
885,412 - +0.7
885,414 + -2.5
885,422 - -2.7
885,427 - -1.4
885,454 + -1.6
885,454 + +1.0
885,459 + -2.9
885,514 + -0.4
885,541 + -1.1
885,574 - +0.6
885,630 - -2.4
885,649 + -0.8
885,675 - -2.1
885,765 + CSW01_18810 0.17 -3.4
885,853 + CSW01_18810 0.26 +1.8
885,864 + CSW01_18810 0.28 -1.4
885,874 - CSW01_18810 0.29 -0.3
885,942 + CSW01_18810 0.36 -0.0
886,050 - CSW01_18810 0.47 +0.3
886,064 + CSW01_18810 0.49 +2.1
886,110 + CSW01_18810 0.54 -0.8
886,118 - CSW01_18810 0.55 -1.0
886,178 + CSW01_18810 0.61 -2.2
886,178 + CSW01_18810 0.61 -1.3
886,186 - CSW01_18810 0.62 -1.2
886,188 + CSW01_18810 0.62 +1.6
886,204 - CSW01_18810 0.64 -2.2
886,213 + CSW01_18810 0.65 -0.8

Or see this region's nucleotide sequence