Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18770

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18765 and CSW01_18770 are separated by 110 nucleotidesCSW01_18770 and CSW01_18775 overlap by 4 nucleotidesCSW01_18775 and CSW01_18780 are separated by 49 nucleotides CSW01_18765: CSW01_18765 - AraC family transcriptional regulator, at 878,121 to 879,218 _18765 CSW01_18770: CSW01_18770 - DUF805 domain-containing protein, at 879,329 to 879,679 _18770 CSW01_18775: CSW01_18775 - hypothetical protein, at 879,676 to 880,185 _18775 CSW01_18780: CSW01_18780 - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 880,235 to 881,362 _18780 Position (kb) 879 880Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 878.353 kb on + strand, within CSW01_18765at 878.375 kb on + strand, within CSW01_18765at 878.375 kb on + strand, within CSW01_18765at 878.383 kb on - strand, within CSW01_18765at 878.385 kb on + strand, within CSW01_18765at 878.388 kb on - strand, within CSW01_18765at 878.396 kb on + strand, within CSW01_18765at 878.467 kb on + strand, within CSW01_18765at 878.498 kb on + strand, within CSW01_18765at 878.577 kb on + strand, within CSW01_18765at 878.701 kb on - strand, within CSW01_18765at 878.757 kb on - strand, within CSW01_18765at 878.784 kb on - strand, within CSW01_18765at 878.805 kb on - strand, within CSW01_18765at 878.868 kb on + strand, within CSW01_18765at 878.882 kb on - strand, within CSW01_18765at 878.897 kb on + strand, within CSW01_18765at 878.898 kb on - strand, within CSW01_18765at 878.933 kb on + strand, within CSW01_18765at 878.934 kb on + strand, within CSW01_18765at 878.941 kb on - strand, within CSW01_18765at 878.941 kb on - strand, within CSW01_18765at 878.941 kb on - strand, within CSW01_18765at 878.946 kb on - strand, within CSW01_18765at 878.986 kb on + strand, within CSW01_18765at 878.994 kb on - strand, within CSW01_18765at 878.996 kb on + strand, within CSW01_18765at 878.996 kb on + strand, within CSW01_18765at 878.999 kb on - strand, within CSW01_18765at 878.999 kb on - strand, within CSW01_18765at 879.034 kb on + strand, within CSW01_18765at 879.081 kb on - strand, within CSW01_18765at 879.083 kb on + strand, within CSW01_18765at 879.092 kb on + strand, within CSW01_18765at 879.100 kb on - strand, within CSW01_18765at 879.100 kb on - strand, within CSW01_18765at 879.100 kb on - strand, within CSW01_18765at 879.229 kb on - strandat 879.229 kb on - strandat 879.428 kb on + strand, within CSW01_18770at 879.436 kb on - strand, within CSW01_18770at 879.449 kb on - strand, within CSW01_18770at 879.456 kb on + strand, within CSW01_18770at 879.456 kb on + strand, within CSW01_18770at 879.456 kb on + strand, within CSW01_18770at 879.464 kb on - strand, within CSW01_18770at 879.464 kb on - strand, within CSW01_18770at 879.480 kb on - strand, within CSW01_18770at 879.484 kb on - strand, within CSW01_18770at 879.494 kb on - strand, within CSW01_18770at 879.506 kb on + strand, within CSW01_18770at 879.508 kb on + strand, within CSW01_18770at 879.519 kb on + strand, within CSW01_18770at 879.565 kb on - strand, within CSW01_18770at 879.693 kb on - strandat 879.704 kb on + strandat 879.734 kb on - strand, within CSW01_18775at 879.758 kb on - strand, within CSW01_18775at 879.758 kb on - strand, within CSW01_18775at 879.783 kb on - strand, within CSW01_18775at 879.873 kb on - strand, within CSW01_18775at 879.993 kb on - strand, within CSW01_18775at 880.066 kb on - strand, within CSW01_18775at 880.288 kb on + strandat 880.320 kb on + strandat 880.328 kb on - strandat 880.365 kb on - strand, within CSW01_18780at 880.435 kb on + strand, within CSW01_18780at 880.455 kb on + strand, within CSW01_18780at 880.606 kb on - strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.616 kb on - strand, within CSW01_18780at 880.616 kb on - strand, within CSW01_18780at 880.616 kb on - strand, within CSW01_18780at 880.616 kb on - strand, within CSW01_18780

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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878,353 + CSW01_18765 0.21 -1.5
878,375 + CSW01_18765 0.23 +0.5
878,375 + CSW01_18765 0.23 -1.6
878,383 - CSW01_18765 0.24 +0.9
878,385 + CSW01_18765 0.24 -0.8
878,388 - CSW01_18765 0.24 -0.1
878,396 + CSW01_18765 0.25 +0.2
878,467 + CSW01_18765 0.32 +0.3
878,498 + CSW01_18765 0.34 -0.4
878,577 + CSW01_18765 0.42 +0.5
878,701 - CSW01_18765 0.53 +0.6
878,757 - CSW01_18765 0.58 +0.9
878,784 - CSW01_18765 0.60 -2.8
878,805 - CSW01_18765 0.62 -1.1
878,868 + CSW01_18765 0.68 +0.5
878,882 - CSW01_18765 0.69 -1.0
878,897 + CSW01_18765 0.71 +0.5
878,898 - CSW01_18765 0.71 -1.9
878,933 + CSW01_18765 0.74 -0.8
878,934 + CSW01_18765 0.74 -1.2
878,941 - CSW01_18765 0.75 -2.6
878,941 - CSW01_18765 0.75 -1.8
878,941 - CSW01_18765 0.75 +1.7
878,946 - CSW01_18765 0.75 -1.1
878,986 + CSW01_18765 0.79 -1.1
878,994 - CSW01_18765 0.80 +0.2
878,996 + CSW01_18765 0.80 -0.2
878,996 + CSW01_18765 0.80 +0.9
878,999 - CSW01_18765 0.80 -1.5
878,999 - CSW01_18765 0.80 +0.7
879,034 + CSW01_18765 0.83 +1.5
879,081 - CSW01_18765 0.87 -0.9
879,083 + CSW01_18765 0.88 -2.5
879,092 + CSW01_18765 0.88 +1.2
879,100 - CSW01_18765 0.89 -2.0
879,100 - CSW01_18765 0.89 +1.8
879,100 - CSW01_18765 0.89 +0.5
879,229 - +0.1
879,229 - -1.4
879,428 + CSW01_18770 0.28 -2.1
879,436 - CSW01_18770 0.30 +1.4
879,449 - CSW01_18770 0.34 +1.1
879,456 + CSW01_18770 0.36 -1.7
879,456 + CSW01_18770 0.36 -0.3
879,456 + CSW01_18770 0.36 -2.0
879,464 - CSW01_18770 0.38 +1.2
879,464 - CSW01_18770 0.38 -0.4
879,480 - CSW01_18770 0.43 +0.5
879,484 - CSW01_18770 0.44 +1.2
879,494 - CSW01_18770 0.47 -0.0
879,506 + CSW01_18770 0.50 -1.5
879,508 + CSW01_18770 0.51 +1.7
879,519 + CSW01_18770 0.54 -0.6
879,565 - CSW01_18770 0.67 -1.6
879,693 - -0.3
879,704 + -0.5
879,734 - CSW01_18775 0.11 +0.8
879,758 - CSW01_18775 0.16 -0.6
879,758 - CSW01_18775 0.16 -0.2
879,783 - CSW01_18775 0.21 +1.4
879,873 - CSW01_18775 0.39 +0.5
879,993 - CSW01_18775 0.62 -1.4
880,066 - CSW01_18775 0.76 +1.9
880,288 + +0.8
880,320 + +1.3
880,328 - +0.9
880,365 - CSW01_18780 0.12 -1.8
880,435 + CSW01_18780 0.18 -0.7
880,455 + CSW01_18780 0.20 +0.8
880,606 - CSW01_18780 0.33 +0.7
880,608 + CSW01_18780 0.33 +0.2
880,608 + CSW01_18780 0.33 -0.7
880,608 + CSW01_18780 0.33 -0.8
880,608 + CSW01_18780 0.33 -0.6
880,608 + CSW01_18780 0.33 -0.3
880,608 + CSW01_18780 0.33 +2.1
880,608 + CSW01_18780 0.33 +1.0
880,616 - CSW01_18780 0.34 -0.2
880,616 - CSW01_18780 0.34 +1.1
880,616 - CSW01_18780 0.34 +1.1
880,616 - CSW01_18780 0.34 -1.6

Or see this region's nucleotide sequence